Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CLC19179_RS04480 Genome accession   NZ_CP176602
Coordinates   853585..854238 (+) Length   217 a.a.
NCBI ID   WP_039668482.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19179     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 848585..859238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19179_RS04455 (CLC19179_00878) - 848688..850208 (-) 1521 WP_039668477.1 inorganic phosphate transporter -
  CLC19179_RS04460 (CLC19179_00879) pdxA 850255..851355 (-) 1101 WP_240379248.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CLC19179_RS04465 (CLC19179_00880) - 851352..852119 (-) 768 WP_149062387.1 pyridoxine 5'-phosphate synthase -
  CLC19179_RS04470 (CLC19179_00881) - 852175..853134 (+) 960 WP_257395172.1 Ppx/GppA family phosphatase -
  CLC19179_RS04475 (CLC19179_00882) - 853145..853588 (+) 444 WP_257395171.1 GatB/YqeY domain-containing protein -
  CLC19179_RS04480 (CLC19179_00883) CJE0566 853585..854238 (+) 654 WP_039668482.1 DNA/RNA endonuclease G Regulator
  CLC19179_RS04485 (CLC19179_00884) dnaK 854268..856130 (-) 1863 WP_114640400.1 molecular chaperone DnaK -
  CLC19179_RS04490 (CLC19179_00885) grpE 856153..856662 (-) 510 WP_220517485.1 nucleotide exchange factor GrpE -
  CLC19179_RS04495 (CLC19179_00886) - 856659..857441 (-) 783 WP_220517486.1 HrcA family transcriptional regulator -
  CLC19179_RS04500 - 857681..857812 (+) 132 WP_256374638.1 hypothetical protein -
  CLC19179_RS04505 (CLC19179_00887) - 857801..858430 (-) 630 WP_240379246.1 hypothetical protein -
  CLC19179_RS04510 (CLC19179_00888) - 858427..858663 (-) 237 WP_039668487.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25902.83 Da        Isoelectric Point: 9.7310

>NTDB_id=1081441 CLC19179_RS04480 WP_039668482.1 853585..854238(+) (CJE0566) [Campylobacter lari subsp. concheus strain RM19179]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NLPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFAKFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081441 CLC19179_RS04480 WP_039668482.1 853585..854238(+) (CJE0566) [Campylobacter lari subsp. concheus strain RM19179]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACACCCTAGCTTTAA
AGCTTATTTTAAAGACTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCAATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACATATCAAAAAACGCCCAAGATTTCAAGAAGATACA
AATTTACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTACCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCGCAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTGAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAATAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTACCAAATAACGATAATTTTGCAAAATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment