Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CLC19175_RS06475 Genome accession   NZ_CP176601
Coordinates   1237739..1238653 (-) Length   304 a.a.
NCBI ID   WP_257402287.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19175     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232739..1243653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19175_RS06450 (CLC19175_01278) mgtE 1233075..1234418 (+) 1344 WP_039668726.1 magnesium transporter -
  CLC19175_RS06455 (CLC19175_01279) tpx 1234432..1234950 (+) 519 WP_039668727.1 thiol peroxidase -
  CLC19175_RS06460 (CLC19175_01280) - 1234947..1236332 (-) 1386 WP_039668728.1 replicative DNA helicase -
  CLC19175_RS06465 (CLC19175_01281) cysK 1236345..1237247 (-) 903 WP_214098621.1 cysteine synthase A -
  CLC19175_RS06470 (CLC19175_01282) - 1237345..1237647 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  CLC19175_RS06475 (CLC19175_01283) waaF 1237739..1238653 (-) 915 WP_257402287.1 glycosyltransferase family 9 protein Regulator
  CLC19175_RS06480 (CLC19175_01284) - 1238711..1239529 (+) 819 WP_257402288.1 glycosyltransferase family 2 protein -
  CLC19175_RS06485 (CLC19175_01285) - 1239516..1240307 (+) 792 WP_410709127.1 hypothetical protein -
  CLC19175_RS06490 (CLC19175_01286) - 1240304..1241212 (+) 909 WP_306808630.1 glycosyltransferase family 2 protein -
  CLC19175_RS06495 (CLC19175_01287) yibB 1241207..1242145 (-) 939 WP_410709130.1 protein YibB -
  CLC19175_RS06500 (CLC19175_01288) - 1242203..1243198 (+) 996 WP_257402397.1 capsular polysaccharide synthesis protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34672.85 Da        Isoelectric Point: 10.3193

>NTDB_id=1081432 CLC19175_RS06475 WP_257402287.1 1237739..1238653(-) (waaF) [Campylobacter lari subsp. concheus strain RM19175]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINAGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEQFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQKNVKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLTKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1081432 CLC19175_RS06475 WP_257402287.1 1237739..1238653(-) (waaF) [Campylobacter lari subsp. concheus strain RM19175]
ATGAATATTTTTATTAACCTTCCCACTTGGCTTGGCGATGCGGTGATGGCTAGTGCAGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCTACTTCAAATGCTTTAA
AGCTTCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCAAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACTCATCAAATTTTGATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAACAATTTCTTCTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGAGTGAAAACAGTAGCTATTTTTGGTTCGACTAAATTTAGTCAAACTTCACCTTGGCAAAAAAATGTTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCACAAATGCATGAAAGACTTAAAGCCTG
AAGTGGTGATAAATTTAACAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.331

100

0.664

Multiple sequence alignment