Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CLC19175_RS04960 Genome accession   NZ_CP176601
Coordinates   936893..937546 (+) Length   217 a.a.
NCBI ID   WP_149062389.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19175     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 931893..942546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19175_RS04935 (CLC19175_00979) - 931993..933513 (-) 1521 WP_039668477.1 inorganic phosphate transporter -
  CLC19175_RS04940 (CLC19175_00980) pdxA 933560..934663 (-) 1104 WP_257399117.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CLC19175_RS04945 (CLC19175_00981) - 934660..935427 (-) 768 WP_149062387.1 pyridoxine 5'-phosphate synthase -
  CLC19175_RS04950 (CLC19175_00982) - 935483..936442 (+) 960 WP_039668480.1 exopolyphosphatase, Ppx/GppA family -
  CLC19175_RS04955 (CLC19175_00983) - 936453..936896 (+) 444 WP_039668481.1 GatB/YqeY domain-containing protein -
  CLC19175_RS04960 (CLC19175_00984) CJE0566 936893..937546 (+) 654 WP_149062389.1 DNA/RNA non-specific endonuclease Regulator
  CLC19175_RS04965 (CLC19175_00985) dnaK 937576..939438 (-) 1863 WP_114640400.1 molecular chaperone DnaK -
  CLC19175_RS04970 (CLC19175_00986) grpE 939461..939970 (-) 510 WP_039668484.1 nucleotide exchange factor GrpE -
  CLC19175_RS04975 (CLC19175_00987) - 939967..940749 (-) 783 WP_220517486.1 HrcA family transcriptional regulator -
  CLC19175_RS04980 - 940989..941120 (+) 132 WP_256374638.1 hypothetical protein -
  CLC19175_RS04985 (CLC19175_00988) - 941109..941738 (-) 630 WP_214098209.1 hypothetical protein -
  CLC19175_RS04990 (CLC19175_00989) - 941735..941971 (-) 237 WP_039668487.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25930.85 Da        Isoelectric Point: 9.7361

>NTDB_id=1081425 CLC19175_RS04960 WP_149062389.1 936893..937546(+) (CJE0566) [Campylobacter lari subsp. concheus strain RM19175]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NLPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081425 CLC19175_RS04960 WP_149062389.1 936893..937546(+) (CJE0566) [Campylobacter lari subsp. concheus strain RM19175]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACACCCTAGCTTTAA
AGCTTATTTTAAAGACTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCAATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACATATCAAAAAACGCCCAAGATTTCAAGAAGATACA
AATTTACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTACCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCGCAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTGAATTTGGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAATAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTACCAAATAACGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment