Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CLC19168_RS04540 Genome accession   NZ_CP176600
Coordinates   876181..876948 (-) Length   255 a.a.
NCBI ID   WP_257402533.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19168     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 871181..881948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19168_RS04515 (CLC19168_00895) flhA 871724..873883 (-) 2160 WP_039668489.1 flagellar biosynthesis protein FlhA -
  CLC19168_RS04520 (CLC19168_00896) - 873876..874280 (-) 405 WP_257402531.1 Rrf2 family transcriptional regulator -
  CLC19168_RS04525 (CLC19168_00897) rpsO 874457..874729 (+) 273 WP_012661650.1 30S ribosomal protein S15 -
  CLC19168_RS04530 (CLC19168_00898) - 874918..875811 (-) 894 WP_257402532.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CLC19168_RS04535 (CLC19168_00899) ruvX 875798..876184 (-) 387 WP_220517489.1 Holliday junction resolvase RuvX -
  CLC19168_RS04540 (CLC19168_00900) dprA 876181..876948 (-) 768 WP_257402533.1 DNA-protecting protein DprA Machinery gene
  CLC19168_RS04545 (CLC19168_00901) - 876935..877993 (-) 1059 WP_039669064.1 divergent polysaccharide deacetylase family protein -
  CLC19168_RS04550 (CLC19168_00902) ilvC 878004..879026 (-) 1023 WP_149062396.1 ketol-acid reductoisomerase -
  CLC19168_RS04555 (CLC19168_00903) - 879134..881074 (+) 1941 WP_257402534.1 VacB/RNase II family 3'-5' exoribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28646.19 Da        Isoelectric Point: 6.4973

>NTDB_id=1081410 CLC19168_RS04540 WP_257402533.1 876181..876948(-) (dprA) [Campylobacter lari subsp. concheus strain RM19168]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAVIGSRKMSVYTKNCLVELVTLLKKTNVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVIIAQADLKSGSIQSARLA
LGMNKPIYVLPHRKNESDGTNLLLATKKANLIHDFDEFAKMFGELHYEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1081410 CLC19168_RS04540 WP_257402533.1 876181..876948(-) (dprA) [Campylobacter lari subsp. concheus strain RM19168]
ATGAAATTTATTGAAAATATTGAGGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAGGGTAATTTAGA
GCTTTTAAATGCTAGAAAAGTAGCTGTTATAGGTTCTAGAAAAATGAGTGTTTATACCAAAAATTGTCTTGTTGAACTGG
TGACTTTGTTAAAAAAAACTAATGTTTGTGTGGTAAGTGGCGGGGCTTTGGGGGTTGATATCCAAGCAGCTAAAATAGCT
TACCCTCAAACCATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTAGCTTTAAGTGAAAATGAAGGAAATTACAAGGCAAAGCCCTATGATTTTTTATTAAGAAATAGGC
TTATTATTGCTTTAAGTGAGGTTGTTATAATAGCTCAAGCTGATTTAAAAAGTGGTTCTATACAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGTGATGGAACAAATTTGCTTTTAGCTACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGCAAAAATGTTTGGAGAGCTTCATTATGAGCAAAGTGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGACGATTTAGAAAAAGTTTTAAAAAAATTTGGCGATAGAGTTTATGAGTATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.483

90.98

0.541
  dprA Helicobacter pylori 26695

44.758

97.255

0.435

Multiple sequence alignment