Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CLC19168_RS04475 Genome accession   NZ_CP176600
Coordinates   865600..866253 (+) Length   217 a.a.
NCBI ID   WP_257402530.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19168     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 860600..871253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19168_RS04450 (CLC19168_00883) - 860703..862223 (-) 1521 WP_257402528.1 inorganic phosphate transporter -
  CLC19168_RS04455 (CLC19168_00884) pdxA 862270..863370 (-) 1101 WP_240379248.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CLC19168_RS04460 (CLC19168_00885) - 863367..864134 (-) 768 WP_149062387.1 pyridoxine 5'-phosphate synthase -
  CLC19168_RS04465 (CLC19168_00886) - 864190..865149 (+) 960 WP_039668480.1 exopolyphosphatase, Ppx/GppA family -
  CLC19168_RS04470 (CLC19168_00887) - 865160..865603 (+) 444 WP_257402529.1 GatB/YqeY domain-containing protein -
  CLC19168_RS04475 (CLC19168_00888) CJE0566 865600..866253 (+) 654 WP_257402530.1 DNA/RNA non-specific endonuclease Regulator
  CLC19168_RS04480 (CLC19168_00889) dnaK 866283..868145 (-) 1863 WP_114640400.1 molecular chaperone DnaK -
  CLC19168_RS04485 (CLC19168_00890) grpE 868168..868677 (-) 510 WP_220517485.1 nucleotide exchange factor GrpE -
  CLC19168_RS04490 (CLC19168_00891) - 868674..869456 (-) 783 WP_220517486.1 HrcA family transcriptional regulator -
  CLC19168_RS04495 - 869696..869827 (+) 132 WP_256374638.1 hypothetical protein -
  CLC19168_RS04500 (CLC19168_00892) - 869816..870445 (-) 630 WP_240379246.1 hypothetical protein -
  CLC19168_RS04505 (CLC19168_00893) - 870442..870678 (-) 237 WP_039668487.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25916.86 Da        Isoelectric Point: 9.7310

>NTDB_id=1081409 CLC19168_RS04475 WP_257402530.1 865600..866253(+) (CJE0566) [Campylobacter lari subsp. concheus strain RM19168]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NLPKKYRTYWEDYLRSGYTRGHVIPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFAKFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081409 CLC19168_RS04475 WP_257402530.1 865600..866253(+) (CJE0566) [Campylobacter lari subsp. concheus strain RM19168]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACACCCTAGCTTTAA
AGCTTATTTTAAAGACTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCAATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACATATCAAAAAACGCCCAAGATTTCAAGAAGATACA
AATTTACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCATACCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCGCAAAAAAAAGATATTAATG
CGGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTGAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAATAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTACCAAATAACGATAATTTTGCAAAATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment