Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CLC19157_RS05190 Genome accession   NZ_CP176599
Coordinates   971775..972542 (-) Length   255 a.a.
NCBI ID   WP_257396653.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19157     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 966775..977542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19157_RS05165 (CLC19157_01006) flhA 967318..969477 (-) 2160 WP_257396657.1 flagellar biosynthesis protein FlhA -
  CLC19157_RS05170 (CLC19157_01007) - 969470..969874 (-) 405 WP_257396656.1 Rrf2 family transcriptional regulator -
  CLC19157_RS05175 (CLC19157_01008) rpsO 970051..970323 (+) 273 WP_012661650.1 30S ribosomal protein S15 -
  CLC19157_RS05180 (CLC19157_01009) - 970512..971405 (-) 894 WP_257396655.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CLC19157_RS05185 (CLC19157_01010) ruvX 971392..971778 (-) 387 WP_257396654.1 Holliday junction resolvase RuvX -
  CLC19157_RS05190 (CLC19157_01011) dprA 971775..972542 (-) 768 WP_257396653.1 DNA-protecting protein DprA Machinery gene
  CLC19157_RS05195 (CLC19157_01012) - 972529..973587 (-) 1059 WP_410689636.1 divergent polysaccharide deacetylase family protein -
  CLC19157_RS05200 (CLC19157_01013) ilvC 973598..974620 (-) 1023 WP_257396651.1 ketol-acid reductoisomerase -
  CLC19157_RS05205 (CLC19157_01014) - 974728..976668 (+) 1941 WP_257396650.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28662.25 Da        Isoelectric Point: 6.4973

>NTDB_id=1081393 CLC19157_RS05190 WP_257396653.1 971775..972542(-) (dprA) [Campylobacter lari subsp. concheus strain RM19157]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAVIGSRKMSVYTKNCLVELVTLLKKTNVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKNESDGTNLLLAAKKANLIHDFDEFVKMFGELHYEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1081393 CLC19157_RS05190 WP_257396653.1 971775..972542(-) (dprA) [Campylobacter lari subsp. concheus strain RM19157]
ATGAAATTTATTGAAAATATTGAGGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAGGGTAATTTAGA
GCTTTTAAATGCTAGAAAAGTAGCTGTTATAGGTTCTAGAAAAATGAGTGTTTATACCAAAAATTGTCTTGTTGAACTGG
TGACTTTGTTAAAAAAAACTAATGTTTGTGTGGTAAGTGGCGGGGCTTTGGGGGTTGATATCCAAGCAGCTAAAATAGCT
TACCCTCAAACCATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTAGCTTTAAGTGAAAATGAAGGAAATTACAAGGCAAAGCCCTATGATTTTTTATTAAGAAATAGAC
TTATTATTGCTTTAAGTGAGGTTGTTATAATAGCCCAAGCTGATTTAAAAAGCGGTTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGCGACGGGACAAATTTGCTTTTAGCTGCAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGTAAAAATGTTTGGAGAGCTTCATTATGAGCAAAGTGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGACGATTTAGAAAAAGTTTTAAAAAAATTTGGCGATAGAGTTTATGAGTATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.345

90.98

0.549
  dprA Helicobacter pylori 26695

45.161

97.255

0.439

Multiple sequence alignment