Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CLC19156_RS04820 Genome accession   NZ_CP176598
Coordinates   901140..901907 (-) Length   255 a.a.
NCBI ID   WP_257399113.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19156     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 896140..906907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19156_RS04795 (CLC19156_00945) flhA 896681..898840 (-) 2160 WP_039668489.1 flagellar biosynthesis protein FlhA -
  CLC19156_RS04800 (CLC19156_00946) - 898833..899237 (-) 405 WP_039668490.1 Rrf2 family transcriptional regulator -
  CLC19156_RS04805 (CLC19156_00947) rpsO 899416..899688 (+) 273 WP_012661650.1 30S ribosomal protein S15 -
  CLC19156_RS04810 (CLC19156_00948) - 899877..900770 (-) 894 WP_214098208.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CLC19156_RS04815 (CLC19156_00949) ruvX 900757..901143 (-) 387 WP_257398085.1 Holliday junction resolvase RuvX -
  CLC19156_RS04820 (CLC19156_00950) dprA 901140..901907 (-) 768 WP_257399113.1 DNA-protecting protein DprA Machinery gene
  CLC19156_RS04825 (CLC19156_00951) - 901894..902952 (-) 1059 WP_039669064.1 divergent polysaccharide deacetylase family protein -
  CLC19156_RS04830 (CLC19156_00952) ilvC 902963..903985 (-) 1023 WP_039668494.1 ketol-acid reductoisomerase -
  CLC19156_RS04835 (CLC19156_00953) - 904093..906033 (+) 1941 WP_039668495.1 VacB/RNase II family 3'-5' exoribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28634.20 Da        Isoelectric Point: 6.4973

>NTDB_id=1081375 CLC19156_RS04820 WP_257399113.1 901140..901907(-) (dprA) [Campylobacter lari subsp. concheus strain RM19156]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAVIGSRKMSVYTKNCLVELVALLKKTNVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKNESDGTNLLLATKKANLIHDFDEFAKMFGELHYEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1081375 CLC19156_RS04820 WP_257399113.1 901140..901907(-) (dprA) [Campylobacter lari subsp. concheus strain RM19156]
ATGAAATTTATTGAAAATATTGAGGATTTTAAAAATCTTTTGAATCCGCCTTCAAAGATTTATTATAAGGGTAATTTAGA
GCTTTTAAATGCTAGAAAAGTAGCTGTTATAGGTTCTAGAAAAATGAGTGTTTATACCAAAAATTGTCTTGTTGAACTGG
TGGCTTTGTTAAAAAAAACTAATGTTTGTGTGGTAAGTGGCGGGGCTTTGGGGGTTGATATCCAAGCAGCTAAAATAGCT
TACCCTCAAACCATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTAGCTTTAAGTGAAAATGAAGGAAATTATAAGGCAAAGCCCTATGATTTTTTATTAAGAAATAGGC
TTATTATTGCTTTAAGTGAGGTTGTTATAATAGCTCAAGCTGATTTAAAAAGTGGTTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGCGATGGAACAAATTTGCTTTTAGCTACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGCAAAAATGTTTGGAGAGCTTCATTATGAGCAAAGTGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGACGATTTAGAAAAAGTTTTAAAAAAATTTGGCGATAGAGTTTATGAGTATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.914

90.98

0.545
  dprA Helicobacter pylori 26695

45.161

97.255

0.439

Multiple sequence alignment