Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CLC19156_RS04755 Genome accession   NZ_CP176598
Coordinates   890557..891210 (+) Length   217 a.a.
NCBI ID   WP_257399114.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19156     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 885557..896210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19156_RS04730 (CLC19156_00933) - 885657..887177 (-) 1521 WP_039668477.1 inorganic phosphate transporter -
  CLC19156_RS04735 (CLC19156_00934) pdxA 887224..888327 (-) 1104 WP_257399117.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CLC19156_RS04740 (CLC19156_00935) - 888324..889091 (-) 768 WP_257399116.1 pyridoxine 5'-phosphate synthase -
  CLC19156_RS04745 (CLC19156_00936) - 889147..890106 (+) 960 WP_257399115.1 Ppx/GppA family phosphatase -
  CLC19156_RS04750 (CLC19156_00937) - 890117..890560 (+) 444 WP_039668481.1 GatB/YqeY domain-containing protein -
  CLC19156_RS04755 (CLC19156_00938) CJE0566 890557..891210 (+) 654 WP_257399114.1 DNA/RNA non-specific endonuclease Regulator
  CLC19156_RS04760 (CLC19156_00939) dnaK 891240..893102 (-) 1863 WP_114640400.1 molecular chaperone DnaK -
  CLC19156_RS04765 (CLC19156_00940) grpE 893125..893634 (-) 510 WP_220517485.1 nucleotide exchange factor GrpE -
  CLC19156_RS04770 (CLC19156_00941) - 893631..894413 (-) 783 WP_220517486.1 HrcA family transcriptional regulator -
  CLC19156_RS04775 - 894653..894784 (+) 132 WP_256374638.1 hypothetical protein -
  CLC19156_RS04780 (CLC19156_00942) - 894773..895402 (-) 630 WP_240379246.1 hypothetical protein -
  CLC19156_RS04785 (CLC19156_00943) - 895399..895635 (-) 237 WP_039668487.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25858.78 Da        Isoelectric Point: 9.8001

>NTDB_id=1081374 CLC19156_RS04755 WP_257399114.1 890557..891210(+) (CJE0566) [Campylobacter lari subsp. concheus strain RM19156]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NLPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRGRYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081374 CLC19156_RS04755 WP_257399114.1 890557..891210(+) (CJE0566) [Campylobacter lari subsp. concheus strain RM19156]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACACCCTAGCTTTAA
AGCTTATTTTAAAGACTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCAATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACATATCAAAAAACGCCCAAGATTTCAAGAAGATACA
AATTTACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTACCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCGCAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGGAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTGAATTTGGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAATAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTACCAAATAACGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.525

100

0.585
  CJE1441 Campylobacter jejuni RM1221

61.692

92.627

0.571

Multiple sequence alignment