Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   CLC19156_RS04340 Genome accession   NZ_CP176598
Coordinates   810351..811007 (+) Length   218 a.a.
NCBI ID   WP_257395777.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19156     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 799502..845889 810351..811007 within 0


Gene organization within MGE regions


Location: 799502..845889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19156_RS04270 - 799502..800962 (-) 1461 Protein_816 DNA translocase FtsK -
  CLC19156_RS04275 (CLC19156_00846) flgL 802384..804612 (-) 2229 WP_039668442.1 flagellar hook-associated protein FlgL -
  CLC19156_RS04285 (CLC19156_00848) - 805046..806224 (+) 1179 WP_047208317.1 tyrosine-type recombinase/integrase -
  CLC19156_RS04290 (CLC19156_00849) - 806217..806402 (-) 186 WP_012661534.1 helix-turn-helix transcriptional regulator -
  CLC19156_RS04295 (CLC19156_00850) - 806404..806760 (-) 357 WP_012661535.1 hypothetical protein -
  CLC19156_RS04300 (CLC19156_00851) - 806776..806982 (-) 207 WP_012661536.1 hypothetical protein -
  CLC19156_RS04305 (CLC19156_00852) - 806966..807340 (-) 375 WP_047208322.1 hypothetical protein -
  CLC19156_RS04310 (CLC19156_00853) - 807337..808203 (-) 867 WP_257399022.1 hypothetical protein -
  CLC19156_RS04315 (CLC19156_00854) - 808223..808381 (-) 159 WP_012661539.1 hypothetical protein -
  CLC19156_RS04320 (CLC19156_00855) - 808384..808563 (-) 180 WP_012661540.1 hypothetical protein -
  CLC19156_RS04325 (CLC19156_00856) - 808912..809211 (-) 300 WP_214098769.1 hypothetical protein -
  CLC19156_RS04330 (CLC19156_00857) - 809212..809418 (-) 207 WP_041570280.1 hypothetical protein -
  CLC19156_RS04335 (CLC19156_00858) - 809693..810349 (+) 657 WP_257399021.1 helix-turn-helix transcriptional regulator -
  CLC19156_RS04340 (CLC19156_00859) CJE1441 810351..811007 (+) 657 WP_257395777.1 DNA/RNA non-specific endonuclease Regulator
  CLC19156_RS04345 (CLC19156_00860) - 811218..813146 (+) 1929 WP_257395776.1 KAP family NTPase -
  CLC19156_RS04350 (CLC19156_00861) - 813127..813279 (-) 153 WP_235362394.1 hypothetical protein -
  CLC19156_RS04355 (CLC19156_00862) - 813263..813655 (-) 393 WP_257395775.1 hypothetical protein -
  CLC19156_RS04360 (CLC19156_00863) - 813895..814362 (-) 468 WP_257395774.1 DUF5675 family protein -
  CLC19156_RS04365 (CLC19156_00864) - 814363..815598 (-) 1236 WP_257395773.1 hypothetical protein -
  CLC19156_RS04370 (CLC19156_00865) - 815599..815970 (-) 372 WP_214098826.1 DUF1353 domain-containing protein -
  CLC19156_RS04375 (CLC19156_00866) - 815951..816448 (-) 498 WP_214135135.1 hypothetical protein -
  CLC19156_RS04380 (CLC19156_00867) - 816450..817085 (-) 636 WP_257395772.1 DUF4376 domain-containing protein -
  CLC19156_RS04385 (CLC19156_00868) - 817095..817544 (-) 450 WP_257399020.1 hypothetical protein -
  CLC19156_RS04390 (CLC19156_00869) - 817546..819138 (-) 1593 WP_257399019.1 hypothetical protein -
  CLC19156_RS04395 (CLC19156_00870) - 819138..819749 (-) 612 WP_257395770.1 hypothetical protein -
  CLC19156_RS04400 (CLC19156_00871) - 819736..820062 (-) 327 WP_012661558.1 hypothetical protein -
  CLC19156_RS04405 (CLC19156_00872) - 820072..820509 (-) 438 WP_012661559.1 head-tail connector protein -
  CLC19156_RS04410 - 820506..820820 (-) 315 WP_410689568.1 hypothetical protein -
  CLC19156_RS04415 (CLC19156_00873) - 820831..821991 (-) 1161 WP_012661561.1 phage major capsid protein -
  CLC19156_RS04420 (CLC19156_00874) - 822002..822553 (-) 552 WP_066006888.1 HK97 family phage prohead protease -
  CLC19156_RS04425 (CLC19156_00875) - 822635..823504 (-) 870 WP_139493088.1 hypothetical protein -
  CLC19156_RS04430 (CLC19156_00876) - 823501..828729 (-) 5229 WP_257399148.1 hypothetical protein -
  CLC19156_RS04435 (CLC19156_00877) - 828762..829109 (+) 348 WP_410689569.1 hypothetical protein -
  CLC19156_RS04440 (CLC19156_00878) - 829101..829319 (-) 219 WP_214126405.1 hypothetical protein -
  CLC19156_RS04445 (CLC19156_00879) - 829400..829771 (-) 372 WP_214098817.1 DNA repair protein -
  CLC19156_RS04450 (CLC19156_00880) - 829768..830742 (-) 975 WP_240390400.1 hypothetical protein -
  CLC19156_RS04455 (CLC19156_00881) - 830806..831156 (-) 351 WP_257399147.1 hypothetical protein -
  CLC19156_RS04460 (CLC19156_00882) - 831157..831681 (-) 525 WP_094750273.1 HK97 gp10 family phage protein -
  CLC19156_RS04465 (CLC19156_00883) - 831669..832838 (-) 1170 WP_257399146.1 phage portal protein -
  CLC19156_RS04470 (CLC19156_00884) - 832917..833648 (-) 732 WP_257399145.1 Rha family transcriptional regulator -
  CLC19156_RS04475 (CLC19156_00885) - 834039..834839 (+) 801 WP_257399144.1 hypothetical protein -
  CLC19156_RS04480 (CLC19156_00886) - 834997..836172 (+) 1176 WP_257399143.1 ATP-binding protein -
  CLC19156_RS04485 (CLC19156_00887) - 836169..836693 (+) 525 WP_257399142.1 hypothetical protein -
  CLC19156_RS04490 (CLC19156_00888) - 836703..837887 (-) 1185 WP_257399141.1 terminase large subunit -
  CLC19156_RS04495 - 837826..838335 (-) 510 WP_257399140.1 terminase large subunit domain-containing protein -
  CLC19156_RS04500 (CLC19156_00889) - 838328..838963 (-) 636 WP_257399139.1 P27 family phage terminase small subunit -
  CLC19156_RS04505 (CLC19156_00890) - 839207..839557 (-) 351 WP_257399138.1 HNH endonuclease -
  CLC19156_RS04510 (CLC19156_00891) - 839554..839832 (-) 279 WP_257395624.1 hypothetical protein -
  CLC19156_RS04515 - 840323..840835 (-) 513 WP_257399137.1 hypothetical protein -
  CLC19156_RS04520 - 840911..841075 (-) 165 WP_257399136.1 hypothetical protein -
  CLC19156_RS04525 (CLC19156_00893) - 841550..841834 (-) 285 WP_257399135.1 hypothetical protein -
  CLC19156_RS04530 (CLC19156_00894) - 841898..842266 (+) 369 WP_256374648.1 HNH endonuclease family protein -
  CLC19156_RS04535 (CLC19156_00895) dnaE 842296..845889 (-) 3594 WP_257399134.1 DNA polymerase III subunit alpha -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25795.60 Da        Isoelectric Point: 10.0865

>NTDB_id=1081373 CLC19156_RS04340 WP_257395777.1 810351..811007(+) (CJE1441) [Campylobacter lari subsp. concheus strain RM19156]
MLKKIFLLALFTSLSFAKYTQYKPSEDFAKYFTKQNCSQVLDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRF
EDDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEV
LNLVNYDSNPQRIKNQIAIPNSYIKIIKGNNFKECYKVPNYKVESENVKLYKIQCNFL

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1081373 CLC19156_RS04340 WP_257395777.1 810351..811007(+) (CJE1441) [Campylobacter lari subsp. concheus strain RM19156]
ATGCTTAAAAAGATATTTTTATTAGCGTTATTTACCTCATTATCTTTTGCAAAGTACACACAATATAAACCAAGTGAAGA
TTTTGCAAAGTATTTTACTAAACAAAACTGCTCTCAAGTTTTAGATAAATTTTATTATATTAATTGTTATGATTATAACT
ACAAAGGTACTAAAGCAGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCGCGCTTT
GAAGATGATACAAATATACCTAAAAAATATCGTACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACATAC
CCTTTCTAATGCCTCTATGAGAAAAACTACTCAAGCTCAAAGAAGTACATTCTTAATGAGTAATATTACTCCGCAAAATC
CACAAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTGGCTTTAAAGCTTGGAGAAATTGAAGTT
TTAAATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTATATCAAGATTAT
AAAAGGTAATAATTTTAAAGAATGCTATAAAGTTCCAAATTATAAAGTGGAAAGTGAGAATGTAAAACTATATAAAATAC
AATGTAACTTTCTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(28-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

85.116

98.624

0.839
  CJE0566 Campylobacter jejuni RM1221

85.116

98.624

0.839

Multiple sequence alignment