Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CLC19153_RS05125 Genome accession   NZ_CP176597
Coordinates   961191..961844 (+) Length   217 a.a.
NCBI ID   WP_257396662.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19153     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 956191..966844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19153_RS05100 (CLC19153_00996) - 956294..957814 (-) 1521 WP_257396667.1 inorganic phosphate transporter -
  CLC19153_RS05105 (CLC19153_00997) pdxA 957861..958961 (-) 1101 WP_257396666.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CLC19153_RS05110 (CLC19153_00998) - 958958..959725 (-) 768 WP_257396665.1 pyridoxine 5'-phosphate synthase -
  CLC19153_RS05115 (CLC19153_00999) - 959781..960740 (+) 960 WP_257396664.1 Ppx/GppA family phosphatase -
  CLC19153_RS05120 (CLC19153_01000) - 960751..961194 (+) 444 WP_257396663.1 GatB/YqeY domain-containing protein -
  CLC19153_RS05125 (CLC19153_01001) CJE0566 961191..961844 (+) 654 WP_257396662.1 DNA/RNA non-specific endonuclease Regulator
  CLC19153_RS05130 (CLC19153_01002) dnaK 961875..963737 (-) 1863 WP_114640400.1 molecular chaperone DnaK -
  CLC19153_RS05135 (CLC19153_01003) grpE 963760..964269 (-) 510 WP_257396661.1 nucleotide exchange factor GrpE -
  CLC19153_RS05140 (CLC19153_01004) - 964266..965048 (-) 783 WP_257396660.1 HrcA family transcriptional regulator -
  CLC19153_RS05145 - 965287..965418 (+) 132 WP_256374638.1 hypothetical protein -
  CLC19153_RS05150 (CLC19153_01005) - 965407..966036 (-) 630 WP_257396659.1 hypothetical protein -
  CLC19153_RS05155 (CLC19153_01006) - 966033..966269 (-) 237 WP_039626390.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25956.89 Da        Isoelectric Point: 9.8001

>NTDB_id=1081357 CLC19153_RS05125 WP_257396662.1 961191..961844(+) (CJE0566) [Campylobacter lari subsp. concheus strain RM19153]
MKKVLTLCALALNSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYNDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081357 CLC19153_RS05125 WP_257396662.1 961191..961844(+) (CJE0566) [Campylobacter lari subsp. concheus strain RM19153]
ATGAAAAAAGTTTTAACACTTTGTGCCTTAGCTTTAAACTCTTTTGCCTATACTCAATATGAGTTACATCCTAGTTTTAA
AGCTTATTTTAAAGACTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCAATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTACACAAGAGGGCATGTCGTACCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCGCAAAAAAAAGATATTAATG
CGGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATAATGATAAGCCAAAACGCATTAAAAATAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAAGCTAAAAA
TTTCAGTGAATGCTATAAAGTACCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment