Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC16711_RS04830 Genome accession   NZ_CP176595
Coordinates   916121..916774 (+) Length   217 a.a.
NCBI ID   WP_087685044.1    Uniprot ID   -
Organism   Campylobacter lari strain RM16711     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 911121..921774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16711_RS04805 (UPTC16711_00956) - 911224..912744 (-) 1521 WP_257936482.1 inorganic phosphate transporter -
  UPTC16711_RS04810 (UPTC16711_00957) pdxA 912791..913891 (-) 1101 WP_257936483.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC16711_RS04815 (UPTC16711_00958) - 913888..914655 (-) 768 WP_039628411.1 pyridoxine 5'-phosphate synthase -
  UPTC16711_RS04820 (UPTC16711_00959) - 914711..915670 (+) 960 WP_257936484.1 Ppx/GppA family phosphatase -
  UPTC16711_RS04825 (UPTC16711_00960) - 915681..916124 (+) 444 WP_257936485.1 GatB/YqeY domain-containing protein -
  UPTC16711_RS04830 (UPTC16711_00961) CJE0566 916121..916774 (+) 654 WP_087685044.1 DNA/RNA non-specific endonuclease Regulator
  UPTC16711_RS04835 (UPTC16711_00962) dnaK 916806..918668 (-) 1863 WP_039641669.1 molecular chaperone DnaK -
  UPTC16711_RS04840 (UPTC16711_00963) grpE 918691..919200 (-) 510 WP_257936486.1 nucleotide exchange factor GrpE -
  UPTC16711_RS04845 (UPTC16711_00964) - 919197..919979 (-) 783 WP_039641676.1 HrcA family transcriptional regulator -
  UPTC16711_RS04850 - 920219..920350 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC16711_RS04855 (UPTC16711_00965) - 920339..920968 (-) 630 WP_257936487.1 hypothetical protein -
  UPTC16711_RS04860 (UPTC16711_00966) - 920965..921201 (-) 237 WP_257939252.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25911.80 Da        Isoelectric Point: 9.6672

>NTDB_id=1081321 UPTC16711_RS04830 WP_087685044.1 916121..916774(+) (CJE0566) [Campylobacter lari strain RM16711]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKHIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081321 UPTC16711_RS04830 WP_087685044.1 916121..916774(+) (CJE0566) [Campylobacter lari strain RM16711]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACCCAATATGAATTGCATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATTCCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAACAAAGAACTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACACATTAAAAACAATATAGCTATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment