Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   UPTC16711_RS03090 Genome accession   NZ_CP176595
Coordinates   572241..572906 (-) Length   221 a.a.
NCBI ID   WP_257939472.1    Uniprot ID   -
Organism   Campylobacter lari strain RM16711     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 567241..577906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16711_RS03040 (UPTC16711_00607) - 567827..568687 (-) 861 WP_257939478.1 lambda-exonuclease family protein -
  UPTC16711_RS03045 (UPTC16711_00608) - 568677..568928 (-) 252 WP_047208136.1 hypothetical protein -
  UPTC16711_RS03050 (UPTC16711_00609) - 568928..569131 (-) 204 WP_039625728.1 hypothetical protein -
  UPTC16711_RS03055 (UPTC16711_00610) - 569769..570044 (-) 276 WP_257939477.1 hypothetical protein -
  UPTC16711_RS03060 - 570095..570244 (+) 150 WP_257939476.1 hypothetical protein -
  UPTC16711_RS03065 (UPTC16711_00611) - 570225..570416 (-) 192 WP_257939475.1 hypothetical protein -
  UPTC16711_RS03070 (UPTC16711_00612) - 570578..570799 (+) 222 WP_257402322.1 hypothetical protein -
  UPTC16711_RS03075 (UPTC16711_00613) - 570917..571342 (+) 426 WP_257939473.1 hypothetical protein -
  UPTC16711_RS03080 (UPTC16711_00614) - 571402..571686 (-) 285 WP_214115101.1 hypothetical protein -
  UPTC16711_RS03085 (UPTC16711_00615) - 571679..572179 (-) 501 WP_214115102.1 Panacea domain-containing protein -
  UPTC16711_RS03090 (UPTC16711_00616) CJE1441 572241..572906 (-) 666 WP_257939472.1 DNA/RNA non-specific endonuclease Regulator
  UPTC16711_RS03095 (UPTC16711_00617) - 572913..573341 (-) 429 WP_257939471.1 protein-export chaperone SecB -
  UPTC16711_RS03100 (UPTC16711_00618) - 573357..574004 (-) 648 WP_257939470.1 hypothetical protein -
  UPTC16711_RS03105 (UPTC16711_00619) - 573986..574393 (-) 408 WP_257939469.1 hypothetical protein -
  UPTC16711_RS03110 (UPTC16711_00620) - 574390..575091 (-) 702 WP_257939468.1 XRE family transcriptional regulator -
  UPTC16711_RS03115 (UPTC16711_00621) - 575241..575462 (+) 222 WP_220701497.1 hypothetical protein -
  UPTC16711_RS03120 (UPTC16711_00622) - 575459..575647 (+) 189 WP_214115107.1 hypothetical protein -
  UPTC16711_RS03125 - 575947..576288 (-) 342 WP_245162304.1 hypothetical protein -
  UPTC16711_RS03130 (UPTC16711_00624) - 576321..577307 (+) 987 WP_257939467.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26056.84 Da        Isoelectric Point: 10.0161

>NTDB_id=1081320 UPTC16711_RS03090 WP_257939472.1 572241..572906(-) (CJE1441) [Campylobacter lari strain RM16711]
MKKLIILPLLTTLALADYTQYKPSKDFAKYFTKQNCSQVLDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPQRIKNQIAIPNSYIKIIKGNNFKECYKVPNYEVDNLSIKRYKFNCDVLTSNY

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1081320 UPTC16711_RS03090 WP_257939472.1 572241..572906(-) (CJE1441) [Campylobacter lari strain RM16711]
ATGAAAAAACTTATAATTTTACCACTATTAACAACTCTAGCCTTAGCTGATTACACACAATACAAGCCAAGTAAAGATTT
TGCAAAGTATTTTACTAAACAAAACTGCTCTCAAGTTTTAGATAAATTTTATTATATTAATTGCTATGATTATAACTACA
AAGGTACTAAAGCAGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCGCGCTTTGAA
GATGATACAAATATACCTAAAAAATATCGTACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACATACCCT
TTCTAATGCCTCTATGAGAAAAACTACTCAAGCTCAAAGAAGTACATTCTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTATATCAAGATTATAAA
AGGTAATAATTTTAAAGAATGCTATAAAGTCCCAAATTATGAAGTCGATAATTTAAGTATAAAAAGATATAAGTTTAATT
GTGATGTTTTAACTAGCAATTATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

87.442

97.285

0.851
  CJE0566 Campylobacter jejuni RM1221

86.977

97.285

0.846

Multiple sequence alignment