Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC15744_RS05260 Genome accession   NZ_CP176594
Coordinates   1018771..1019424 (+) Length   217 a.a.
NCBI ID   WP_087690628.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15744     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013771..1024424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15744_RS05235 (UPTC15744_01023) - 1013874..1015394 (-) 1521 WP_114640394.1 inorganic phosphate transporter -
  UPTC15744_RS05240 (UPTC15744_01024) pdxA 1015441..1016541 (-) 1101 WP_257906280.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC15744_RS05245 (UPTC15744_01025) - 1016538..1017305 (-) 768 WP_214097556.1 pyridoxine 5'-phosphate synthase -
  UPTC15744_RS05250 (UPTC15744_01026) - 1017361..1018320 (+) 960 WP_257906279.1 Ppx/GppA family phosphatase -
  UPTC15744_RS05255 (UPTC15744_01027) - 1018331..1018774 (+) 444 WP_257906278.1 GatB/YqeY domain-containing protein -
  UPTC15744_RS05260 (UPTC15744_01028) CJE0566 1018771..1019424 (+) 654 WP_087690628.1 DNA/RNA non-specific endonuclease Regulator
  UPTC15744_RS05265 (UPTC15744_01029) dnaK 1019455..1021317 (-) 1863 WP_039641669.1 molecular chaperone DnaK -
  UPTC15744_RS05270 (UPTC15744_01030) grpE 1021340..1021849 (-) 510 WP_257906277.1 nucleotide exchange factor GrpE -
  UPTC15744_RS05275 (UPTC15744_01031) - 1021846..1022628 (-) 783 WP_214114770.1 HrcA family transcriptional regulator -
  UPTC15744_RS05280 - 1022869..1023000 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC15744_RS05285 (UPTC15744_01032) - 1022989..1023618 (-) 630 WP_257906276.1 hypothetical protein -
  UPTC15744_RS05290 (UPTC15744_01033) - 1023615..1023851 (-) 237 WP_214114771.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25910.82 Da        Isoelectric Point: 9.7363

>NTDB_id=1081303 UPTC15744_RS05260 WP_087690628.1 1018771..1019424(+) (CJE0566) [Campylobacter lari strain RM15744]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKHIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFNRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081303 UPTC15744_RS05260 WP_087690628.1 1018771..1019424(+) (CJE0566) [Campylobacter lari strain RM15744]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATTCCTAAAAAGTACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAACAAAGAACTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACACATTAAAAACAATATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTAATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.525

100

0.585
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment