Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC15624_RS04655 Genome accession   NZ_CP176593
Coordinates   885672..886325 (+) Length   217 a.a.
NCBI ID   WP_070256814.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15624     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 880672..891325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15624_RS04630 (UPTC15624_00916) - 880775..882295 (-) 1521 WP_039628409.1 inorganic phosphate transporter -
  UPTC15624_RS04635 (UPTC15624_00917) pdxA 882342..883442 (-) 1101 WP_039628410.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC15624_RS04640 (UPTC15624_00918) - 883439..884206 (-) 768 WP_039628411.1 pyridoxine 5'-phosphate synthase -
  UPTC15624_RS04645 (UPTC15624_00919) - 884262..885221 (+) 960 WP_039628412.1 exopolyphosphatase, Ppx/GppA family -
  UPTC15624_RS04650 (UPTC15624_00920) - 885232..885675 (+) 444 WP_039628413.1 GatB/YqeY domain-containing protein -
  UPTC15624_RS04655 (UPTC15624_00921) CJE0566 885672..886325 (+) 654 WP_070256814.1 DNA/RNA non-specific endonuclease Regulator
  UPTC15624_RS04660 (UPTC15624_00922) dnaK 886357..888219 (-) 1863 WP_257942440.1 molecular chaperone DnaK -
  UPTC15624_RS04665 (UPTC15624_00923) grpE 888242..888751 (-) 510 WP_039628416.1 nucleotide exchange factor GrpE -
  UPTC15624_RS04670 (UPTC15624_00924) - 888748..889530 (-) 783 WP_039641676.1 HrcA family transcriptional regulator -
  UPTC15624_RS04675 - 889770..889901 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC15624_RS04680 (UPTC15624_00925) - 889890..890519 (-) 630 WP_257942439.1 hypothetical protein -
  UPTC15624_RS04685 (UPTC15624_00926) - 890516..890752 (-) 237 WP_257942438.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25911.84 Da        Isoelectric Point: 9.7310

>NTDB_id=1081284 UPTC15624_RS04655 WP_070256814.1 885672..886325(+) (CJE0566) [Campylobacter lari strain RM15624]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPKAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKHIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081284 UPTC15624_RS04655 WP_070256814.1 885672..886325(+) (CJE0566) [Campylobacter lari strain RM15624]
ATGAAAAAAGTTTTAACGCTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACCCAATATGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCAAAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAACAAAGAACTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACACATTAAAAACAATATAGCTATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.525

100

0.585
  CJE1441 Campylobacter jejuni RM1221

61.692

92.627

0.571

Multiple sequence alignment