Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   UPTC15624_RS04235 Genome accession   NZ_CP176593
Coordinates   801935..802591 (+) Length   218 a.a.
NCBI ID   WP_257395777.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15624     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 796935..807591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15624_RS04185 (UPTC15624_00831) - 797853..798038 (-) 186 WP_012661534.1 helix-turn-helix transcriptional regulator -
  UPTC15624_RS04190 (UPTC15624_00832) - 798040..798396 (-) 357 WP_012661535.1 hypothetical protein -
  UPTC15624_RS04195 (UPTC15624_00833) - 798412..798618 (-) 207 WP_214126389.1 hypothetical protein -
  UPTC15624_RS04200 (UPTC15624_00834) - 798602..798976 (-) 375 WP_087699185.1 hypothetical protein -
  UPTC15624_RS04205 (UPTC15624_00835) - 798973..799839 (-) 867 WP_257942475.1 hypothetical protein -
  UPTC15624_RS04210 (UPTC15624_00836) - 799861..800019 (-) 159 WP_012661539.1 hypothetical protein -
  UPTC15624_RS04215 (UPTC15624_00837) - 800022..800201 (-) 180 WP_214098770.1 hypothetical protein -
  UPTC15624_RS04220 (UPTC15624_00838) - 800550..800849 (-) 300 WP_214098769.1 hypothetical protein -
  UPTC15624_RS04225 (UPTC15624_00839) - 800850..801056 (-) 207 WP_041570280.1 hypothetical protein -
  UPTC15624_RS04230 (UPTC15624_00840) - 801289..801933 (+) 645 WP_257395778.1 S24 family peptidase -
  UPTC15624_RS04235 (UPTC15624_00841) CJE1441 801935..802591 (+) 657 WP_257395777.1 DNA/RNA non-specific endonuclease Regulator
  UPTC15624_RS04240 (UPTC15624_00842) - 802802..804700 (+) 1899 WP_257942474.1 KAP family NTPase -
  UPTC15624_RS04245 (UPTC15624_00843) - 804681..804833 (-) 153 WP_235362394.1 hypothetical protein -
  UPTC15624_RS04250 (UPTC15624_00844) - 804817..805206 (-) 390 WP_257942473.1 hypothetical protein -
  UPTC15624_RS04255 (UPTC15624_00845) - 805437..805904 (-) 468 WP_257942472.1 DUF5675 family protein -
  UPTC15624_RS04260 (UPTC15624_00846) - 805905..807347 (-) 1443 WP_257942471.1 collagen-like protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25795.60 Da        Isoelectric Point: 10.0865

>NTDB_id=1081283 UPTC15624_RS04235 WP_257395777.1 801935..802591(+) (CJE1441) [Campylobacter lari strain RM15624]
MLKKIFLLALFTSLSFAKYTQYKPSEDFAKYFTKQNCSQVLDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRF
EDDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEV
LNLVNYDSNPQRIKNQIAIPNSYIKIIKGNNFKECYKVPNYKVESENVKLYKIQCNFL

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1081283 UPTC15624_RS04235 WP_257395777.1 801935..802591(+) (CJE1441) [Campylobacter lari strain RM15624]
ATGCTTAAAAAGATATTTTTATTAGCGTTATTTACTTCATTATCTTTTGCAAAGTACACACAATATAAACCGAGTGAAGA
TTTTGCAAAGTATTTTACTAAACAAAACTGCTCTCAAGTTTTAGATAAATTTTATTATATTAATTGTTATGATTATAACT
ACAAAGGTACTAAAGCAGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCGCGCTTT
GAAGATGATACAAATATACCTAAAAAATATCGTACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACATAC
CCTTTCTAATGCCTCTATGAGAAAAACTACTCAAGCTCAAAGAAGTACATTCTTAATGAGTAATATTACTCCGCAAAATC
CACAAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTGGCTTTAAAGCTTGGAGAAATTGAAGTT
TTAAATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTATATCAAGATTAT
AAAAGGTAATAATTTTAAAGAATGCTATAAAGTTCCAAATTATAAAGTGGAAAGTGAGAATGTAAAACTATATAAAATAC
AATGTAACTTTCTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(28-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

85.116

98.624

0.839
  CJE0566 Campylobacter jejuni RM1221

85.116

98.624

0.839

Multiple sequence alignment