Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC15610_RS05145 Genome accession   NZ_CP176591
Coordinates   996190..996843 (+) Length   217 a.a.
NCBI ID   WP_214114768.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15610     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 991190..1001843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15610_RS05120 (UPTC15610_01008) - 991293..992813 (-) 1521 WP_039628409.1 inorganic phosphate transporter -
  UPTC15610_RS05125 (UPTC15610_01009) pdxA 992860..993960 (-) 1101 WP_214097557.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC15610_RS05130 (UPTC15610_01010) - 993957..994724 (-) 768 WP_214114766.1 pyridoxine 5'-phosphate synthase -
  UPTC15610_RS05135 (UPTC15610_01011) - 994780..995739 (+) 960 WP_214114767.1 Ppx/GppA family phosphatase -
  UPTC15610_RS05140 (UPTC15610_01012) - 995750..996193 (+) 444 WP_039618486.1 GatB/YqeY domain-containing protein -
  UPTC15610_RS05145 (UPTC15610_01013) CJE0566 996190..996843 (+) 654 WP_214114768.1 DNA/RNA non-specific endonuclease Regulator
  UPTC15610_RS05150 (UPTC15610_01014) dnaK 996874..998736 (-) 1863 WP_214114769.1 molecular chaperone DnaK -
  UPTC15610_RS05155 (UPTC15610_01015) grpE 998759..999268 (-) 510 WP_087690630.1 nucleotide exchange factor GrpE -
  UPTC15610_RS05160 (UPTC15610_01016) - 999265..1000047 (-) 783 WP_214114770.1 HrcA family transcriptional regulator -
  UPTC15610_RS05165 - 1000287..1000418 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC15610_RS05170 (UPTC15610_01017) - 1000407..1001036 (-) 630 WP_115645684.1 hypothetical protein -
  UPTC15610_RS05175 (UPTC15610_01018) - 1001033..1001269 (-) 237 WP_214114771.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25928.92 Da        Isoelectric Point: 9.9105

>NTDB_id=1081248 UPTC15610_RS05145 WP_214114768.1 996190..996843(+) (CJE0566) [Campylobacter lari strain RM15610]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKKLEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFNRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081248 UPTC15610_RS05145 WP_214114768.1 996190..996843(+) (CJE0566) [Campylobacter lari strain RM15610]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACCCAATATGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCTATTGCTTATAAATTAGAGGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAAAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAACAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTAATAGAAATTATTTTAAGGAAGATTGCAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.687

92.627

0.581

Multiple sequence alignment