Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   UPTC15610_RS03210 Genome accession   NZ_CP176591
Coordinates   595040..595705 (-) Length   221 a.a.
NCBI ID   WP_214115103.1    Uniprot ID   -
Organism   Campylobacter lari strain RM15610     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 590040..600705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC15610_RS03165 (UPTC15610_00626) - 590594..590845 (-) 252 WP_039625727.1 hypothetical protein -
  UPTC15610_RS03170 (UPTC15610_00627) - 590845..591048 (-) 204 WP_214115095.1 hypothetical protein -
  UPTC15610_RS03175 (UPTC15610_00628) - 591638..591916 (-) 279 WP_214115096.1 hypothetical protein -
  UPTC15610_RS03180 (UPTC15610_00629) - 592079..592300 (+) 222 WP_214115097.1 hypothetical protein -
  UPTC15610_RS03185 (UPTC15610_00630) - 592325..592543 (+) 219 WP_214115098.1 hypothetical protein -
  UPTC15610_RS03190 (UPTC15610_00631) - 592603..593106 (+) 504 WP_214115099.1 ImmA/IrrE family metallo-endopeptidase -
  UPTC15610_RS03195 (UPTC15610_00632) - 593099..593551 (+) 453 WP_214115100.1 hypothetical protein -
  UPTC15610_RS03200 (UPTC15610_00633) - 594201..594485 (-) 285 WP_214115101.1 hypothetical protein -
  UPTC15610_RS03205 (UPTC15610_00634) - 594478..594978 (-) 501 WP_214115102.1 Panacea domain-containing protein -
  UPTC15610_RS03210 (UPTC15610_00635) CJE1441 595040..595705 (-) 666 WP_214115103.1 DNA/RNA non-specific endonuclease Regulator
  UPTC15610_RS03215 (UPTC15610_00636) - 595749..596021 (-) 273 WP_052773993.1 hypothetical protein -
  UPTC15610_RS03220 (UPTC15610_00637) - 596002..596898 (-) 897 WP_214115104.1 hypothetical protein -
  UPTC15610_RS03225 (UPTC15610_00638) - 596944..597645 (-) 702 WP_214115105.1 XRE family transcriptional regulator -
  UPTC15610_RS03230 (UPTC15610_00639) - 597795..598016 (+) 222 WP_214115106.1 hypothetical protein -
  UPTC15610_RS03235 (UPTC15610_00640) - 598013..598201 (+) 189 WP_214115107.1 hypothetical protein -
  UPTC15610_RS03240 (UPTC15610_00641) - 598586..599572 (+) 987 WP_257914263.1 hypothetical protein -
  UPTC15610_RS03245 (UPTC15610_00642) - 599580..600245 (+) 666 WP_257914261.1 hypothetical protein -
  UPTC15610_RS03250 (UPTC15610_00643) - 600242..600628 (+) 387 WP_039625747.1 endodeoxyribonuclease RusA-like protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26106.76 Da        Isoelectric Point: 9.7804

>NTDB_id=1081247 UPTC15610_RS03210 WP_214115103.1 595040..595705(-) (CJE1441) [Campylobacter lari strain RM15610]
MKKLIILSLLTTLALADYTQYKPSEDFAKYFTKQNCSQVLDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSDYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPQRIKNQIAIPDSYIKIIKGNNFKECYKVPNYEVDNLSIKRYKFNCDVLTSNY

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1081247 UPTC15610_RS03210 WP_214115103.1 595040..595705(-) (CJE1441) [Campylobacter lari strain RM15610]
ATGAAAAAACTTATAATTTTATCACTATTAACAACTCTAGCCTTAGCTGATTATACACAATATAAACCGAGTGAAGATTT
TGCAAAGTATTTTACTAAACAAAACTGCTCTCAAGTTTTAGATAAATTTTATTATATTAATTGCTATGATTATAACTACA
AAGGTACTAAAGCGGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCGCGCTTTGAA
GATGATACAAATATCCCTAAAAAATATCGTACCACTTGGAGTGATTATAAAAATAGCGATTATGATAGAGGACATACCCT
TTCTAATGCCTCTATGAGAAAAACTACTCAAGCTCAAAGAAGTACATTCTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAAAAATCAAATTGCTATTCCAGACTCTTATATCAAGATTATAAA
AGGTAATAATTTTAAAGAATGCTATAAAGTTCCAAATTATGAAGTCGATAATTTAAGTATAAAAAGATATAAGTTTAATT
GTGATGTTTTAACTAGCAATTATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

87.907

97.285

0.855
  CJE0566 Campylobacter jejuni RM1221

86.512

97.285

0.842

Multiple sequence alignment