Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC5117_RS05185 Genome accession   NZ_CP176590
Coordinates   992204..992857 (+) Length   217 a.a.
NCBI ID   WP_257929192.1    Uniprot ID   -
Organism   Campylobacter lari strain S4:11     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 987204..997857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5117_RS05160 (UPTC5117_01016) - 987307..988827 (-) 1521 WP_039628409.1 inorganic phosphate transporter -
  UPTC5117_RS05165 (UPTC5117_01017) pdxA 988874..989974 (-) 1101 WP_257929189.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC5117_RS05170 (UPTC5117_01018) - 989971..990738 (-) 768 WP_214097556.1 pyridoxine 5'-phosphate synthase -
  UPTC5117_RS05175 (UPTC5117_01019) - 990794..991753 (+) 960 WP_257929190.1 Ppx/GppA family phosphatase -
  UPTC5117_RS05180 (UPTC5117_01020) - 991764..992207 (+) 444 WP_257929191.1 GatB/YqeY domain-containing protein -
  UPTC5117_RS05185 (UPTC5117_01021) CJE0566 992204..992857 (+) 654 WP_257929192.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5117_RS05190 (UPTC5117_01022) dnaK 992887..994749 (-) 1863 WP_039641669.1 molecular chaperone DnaK -
  UPTC5117_RS05195 (UPTC5117_01023) grpE 994772..995281 (-) 510 WP_087690630.1 nucleotide exchange factor GrpE -
  UPTC5117_RS05200 (UPTC5117_01024) - 995278..996060 (-) 783 WP_087690632.1 HrcA family transcriptional regulator -
  UPTC5117_RS05205 - 996300..996431 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC5117_RS05210 (UPTC5117_01025) - 996420..997049 (-) 630 WP_214116630.1 hypothetical protein -
  UPTC5117_RS05215 (UPTC5117_01026) - 997046..997282 (-) 237 WP_039626390.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25896.74 Da        Isoelectric Point: 9.6722

>NTDB_id=1081230 UPTC5117_RS05185 WP_257929192.1 992204..992857(+) (CJE0566) [Campylobacter lari strain S4:11]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDNPKHIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFNRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081230 UPTC5117_RS05185 WP_257929192.1 992204..992857(+) (CJE0566) [Campylobacter lari strain S4:11]
ATGAAAAAAGTTTTGACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTGCATCCTAGCTTTAA
AGCTTATTTTAAAGATTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGGCACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATACAGAACTTATTGGGAAGATTATCTAAGAAGTGGCTATACAAGAGGGCATGTCGTGCCAAATCA
ATCTATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCGCAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAACAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAACCCAAAACACATTAAAAACAATATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTTCCAAATAATGATAATTTTGCAAGATTTAATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.687

92.627

0.581

Multiple sequence alignment