Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   UPTC5117_RS03130 Genome accession   NZ_CP176590
Coordinates   576584..577258 (-) Length   224 a.a.
NCBI ID   WP_257929669.1    Uniprot ID   -
Organism   Campylobacter lari strain S4:11     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 571584..582258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5117_RS03070 (UPTC5117_00607) - 571594..572337 (-) 744 WP_257929663.1 phage regulatory protein/antirepressor Ant -
  UPTC5117_RS03075 (UPTC5117_00608) - 572334..572516 (-) 183 WP_087685549.1 hypothetical protein -
  UPTC5117_RS03080 (UPTC5117_00609) - 572659..572856 (+) 198 WP_087685550.1 hypothetical protein -
  UPTC5117_RS03085 - 572849..572995 (-) 147 WP_192860688.1 hypothetical protein -
  UPTC5117_RS03090 (UPTC5117_00610) - 572992..573237 (-) 246 WP_257929664.1 hypothetical protein -
  UPTC5117_RS03095 (UPTC5117_00611) - 573237..573440 (-) 204 WP_257929665.1 hypothetical protein -
  UPTC5117_RS03100 (UPTC5117_00612) - 574044..574319 (-) 276 WP_257929666.1 hypothetical protein -
  UPTC5117_RS03105 - 574371..574520 (+) 150 WP_167348867.1 hypothetical protein -
  UPTC5117_RS03110 (UPTC5117_00613) - 574501..574692 (-) 192 WP_066008559.1 hypothetical protein -
  UPTC5117_RS03115 (UPTC5117_00614) - 574923..575618 (+) 696 WP_373274453.1 sel1 repeat family protein -
  UPTC5117_RS03120 (UPTC5117_00615) - 575634..575921 (-) 288 WP_039625734.1 hypothetical protein -
  UPTC5117_RS03125 (UPTC5117_00616) - 575912..576427 (-) 516 WP_257929668.1 Panacea domain-containing protein -
  UPTC5117_RS03130 (UPTC5117_00617) CJE1441 576584..577258 (-) 675 WP_257929669.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5117_RS03135 (UPTC5117_00618) - 577302..577574 (-) 273 WP_039625737.1 hypothetical protein -
  UPTC5117_RS03140 (UPTC5117_00619) - 577555..578457 (-) 903 WP_257929670.1 hypothetical protein -
  UPTC5117_RS03145 (UPTC5117_00620) - 578533..579234 (-) 702 WP_257929671.1 XRE family transcriptional regulator -
  UPTC5117_RS03150 (UPTC5117_00621) - 579384..579605 (+) 222 WP_220701497.1 hypothetical protein -
  UPTC5117_RS03155 (UPTC5117_00622) - 579602..579790 (+) 189 WP_257929673.1 hypothetical protein -
  UPTC5117_RS03160 (UPTC5117_00623) - 580027..580197 (+) 171 WP_214100027.1 hypothetical protein -
  UPTC5117_RS03165 (UPTC5117_00624) - 580294..580635 (-) 342 WP_257929674.1 hypothetical protein -
  UPTC5117_RS03170 (UPTC5117_00625) - 580668..581654 (+) 987 WP_257929675.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26365.05 Da        Isoelectric Point: 9.9332

>NTDB_id=1081229 UPTC5117_RS03130 WP_257929669.1 576584..577258(-) (CJE1441) [Campylobacter lari strain S4:11]
MKKLIILSLLTTLALADYTQYKPSEDFAKYFTKQNCSQVLDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEIL
NLVNYDSNPQRIKNQIAIPNSYIKIIKGNNFKECYKVPNYEVDNLSIKRYKFNCDVLTSNNHQS

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1081229 UPTC5117_RS03130 WP_257929669.1 576584..577258(-) (CJE1441) [Campylobacter lari strain S4:11]
ATGAAAAAACTTATAATTTTATCACTATTAACAACTCTAGCCTTAGCTGATTATACACAATATAAACCGAGTGAAGATTT
TGCAAAGTATTTTACTAAACAAAACTGCTCTCAGGTTTTAGATAAATTTTATTATATTAATTGCTATGATTATAACTACA
AAGGCACTAAAGCAGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAGCGCCCGCGCTTTGAA
GATGATACAAATATACCTAAAAAATATCGTACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACATACCCT
TTCTAATGCCTCTATGAGAAAAACTACTCAAGCTCAAAGAAGTACATTCTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAATTTTA
AATTTAGTTAATTATGATAGCAACCCACAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTATATCAAGATTATAAA
AGGTAATAATTTTAAAGAATGTTATAAAGTTCCAAATTATGAAGTCGATAATTTAAGTATAAAAAGATATAAGTTCAATT
GTGATGTTTTAACTAGCAATAATCATCAGTCTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

87.907

95.982

0.844
  CJE0566 Campylobacter jejuni RM1221

86.512

95.982

0.83

Multiple sequence alignment