Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC5105_RS04580 Genome accession   NZ_CP176589
Coordinates   879024..879677 (+) Length   217 a.a.
NCBI ID   WP_257904323.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:28     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 874024..884677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5105_RS04555 (UPTC5105_00904) - 874126..875646 (-) 1521 WP_257904319.1 inorganic phosphate transporter -
  UPTC5105_RS04560 (UPTC5105_00905) pdxA 875693..876793 (-) 1101 WP_257904320.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC5105_RS04565 (UPTC5105_00906) - 876790..877557 (-) 768 WP_039664134.1 pyridoxine 5'-phosphate synthase -
  UPTC5105_RS04570 (UPTC5105_00907) - 877614..878573 (+) 960 WP_257904321.1 Ppx/GppA family phosphatase -
  UPTC5105_RS04575 (UPTC5105_00908) - 878584..879027 (+) 444 WP_257904322.1 GatB/YqeY domain-containing protein -
  UPTC5105_RS04580 (UPTC5105_00909) CJE0566 879024..879677 (+) 654 WP_257904323.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5105_RS04585 (UPTC5105_00910) dnaK 879709..881571 (-) 1863 WP_039641669.1 molecular chaperone DnaK -
  UPTC5105_RS04590 (UPTC5105_00911) grpE 881594..882103 (-) 510 WP_039628416.1 nucleotide exchange factor GrpE -
  UPTC5105_RS04595 (UPTC5105_00912) - 882100..882882 (-) 783 WP_257904324.1 HrcA family transcriptional regulator -
  UPTC5105_RS04600 - 883122..883253 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC5105_RS04605 (UPTC5105_00913) - 883242..883871 (-) 630 WP_257904325.1 hypothetical protein -
  UPTC5105_RS04610 (UPTC5105_00914) - 883868..884104 (-) 237 WP_039626390.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25971.84 Da        Isoelectric Point: 9.7129

>NTDB_id=1081213 UPTC5105_RS04580 WP_257904323.1 879024..879677(+) (CJE0566) [Campylobacter lari strain S3:28]
MKKVLTLYALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKHIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081213 UPTC5105_RS04580 WP_257904323.1 879024..879677(+) (CJE0566) [Campylobacter lari strain S3:28]
ATGAAAAAAGTTTTAACGCTTTACGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTGCATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATTCCTAAAAAGTACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAACAAAGAACTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACACATTAAAAACAATATAGCTATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment