Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   UPTC5105_RS04315 Genome accession   NZ_CP176589
Coordinates   825645..826301 (+) Length   218 a.a.
NCBI ID   WP_257904293.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:28     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 820645..831301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5105_RS04270 (UPTC5105_00851) - 820959..821165 (-) 207 WP_214126389.1 hypothetical protein -
  UPTC5105_RS04275 (UPTC5105_00852) - 821149..821523 (-) 375 WP_087699185.1 hypothetical protein -
  UPTC5105_RS04280 (UPTC5105_00853) - 821520..822386 (-) 867 WP_257904290.1 hypothetical protein -
  UPTC5105_RS04285 (UPTC5105_00854) - 822408..822566 (-) 159 WP_012661539.1 hypothetical protein -
  UPTC5105_RS04290 (UPTC5105_00855) - 822569..822748 (-) 180 WP_257395779.1 hypothetical protein -
  UPTC5105_RS04295 (UPTC5105_00856) - 823097..823396 (-) 300 WP_214098769.1 hypothetical protein -
  UPTC5105_RS04300 (UPTC5105_00857) - 823397..823603 (-) 207 WP_041570280.1 hypothetical protein -
  UPTC5105_RS04305 (UPTC5105_00858) - 823895..824545 (+) 651 WP_257904291.1 hypothetical protein -
  UPTC5105_RS04310 (UPTC5105_00859) - 824786..825643 (+) 858 WP_257904292.1 S24 family peptidase -
  UPTC5105_RS04315 (UPTC5105_00860) CJE1441 825645..826301 (+) 657 WP_257904293.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5105_RS04320 (UPTC5105_00861) - 826512..828353 (+) 1842 WP_257904294.1 KAP family NTPase -
  UPTC5105_RS04325 (UPTC5105_00862) - 828393..828665 (-) 273 WP_257904407.1 hypothetical protein -
  UPTC5105_RS04330 - 828583..828924 (-) 342 Protein_827 hypothetical protein -
  UPTC5105_RS04335 (UPTC5105_00864) - 829601..831025 (+) 1425 WP_257904295.1 KAP family NTPase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25768.53 Da        Isoelectric Point: 10.0413

>NTDB_id=1081212 UPTC5105_RS04315 WP_257904293.1 825645..826301(+) (CJE1441) [Campylobacter lari strain S3:28]
MLKKIFLLALFTSLSFAKYTQYKPSEDFAKYFTTQNCSQVLDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRF
EDDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEV
LNLVNYDSNPQRIKNQIAIPNSYIKIIKGNNFKECYKVPNYKVESENVKLYKIQCNFL

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1081212 UPTC5105_RS04315 WP_257904293.1 825645..826301(+) (CJE1441) [Campylobacter lari strain S3:28]
ATGCTTAAAAAGATATTTTTATTAGCGTTATTTACTTCATTATCTTTTGCAAAGTACACACAATATAAACCGAGTGAAGA
TTTTGCAAAGTATTTTACTACACAAAATTGCTCTCAAGTTTTAGATAAATTTTATTATATTAATTGTTATGATTATAACT
ACAAAGGTACTAAAGCAGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAGCGTCCGCGCTTT
GAAGATGATACAAATATCCCTAAAAAATATCGCACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACATAC
CCTTTCTAATGCCTCTATGAGAAAAACTACTCAAGCTCAAAGAAGTACATTCTTAATGAGTAATATTACTCCGCAAAATC
CACAAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTT
TTAAATTTAGTTAATTATGATAGCAACCCTCAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTATATAAAAATTAT
AAAAGGTAATAATTTTAAAGAATGCTATAAAGTTCCAAATTATAAAGTGGAAAGTGAGAATGTAAAACTATATAAAATAC
AATGTAACTTTCTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(26-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

84.651

98.624

0.835
  CJE0566 Campylobacter jejuni RM1221

84.651

98.624

0.835

Multiple sequence alignment