Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC5100_RS06245 Genome accession   NZ_CP176588
Coordinates   1213072..1213992 (-) Length   306 a.a.
NCBI ID   WP_410689891.1    Uniprot ID   -
Organism   Campylobacter lari strain M595a     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208072..1218992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5100_RS06225 (UPTC5100_01232) cysK 1209042..1209944 (-) 903 WP_258108770.1 cysteine synthase A -
  UPTC5100_RS06230 (UPTC5100_01233) - 1210040..1210342 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC5100_RS06235 (UPTC5100_01234) - 1210421..1211557 (-) 1137 WP_258108769.1 hypothetical protein -
  UPTC5100_RS06240 (UPTC5100_01235) - 1211566..1213071 (-) 1506 WP_410689952.1 MBOAT family O-acyltransferase -
  UPTC5100_RS06245 (UPTC5100_01236) waaF 1213072..1213992 (-) 921 WP_410689891.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC5100_RS06250 (UPTC5100_01237) - 1214006..1215118 (-) 1113 WP_258109053.1 hypothetical protein -
  UPTC5100_RS06255 (UPTC5100_01238) - 1215127..1216629 (-) 1503 WP_410689954.1 MBOAT family O-acyltransferase -
  UPTC5100_RS06260 (UPTC5100_01239) - 1216687..1217493 (+) 807 WP_258108816.1 glycosyltransferase family 2 protein -
  UPTC5100_RS06265 (UPTC5100_01240) - 1217490..1218206 (-) 717 WP_258108817.1 cytidylyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34734.70 Da        Isoelectric Point: 10.1918

>NTDB_id=1081203 UPTC5100_RS06245 WP_410689891.1 1213072..1213992(-) (waaF) [Campylobacter lari strain M595a]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQVLVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNSLKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIERFLLKEDIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQESAKIAHLDLACMPCMQKVCPLKHHKCMKDLSPDVVINLAKNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1081203 UPTC5100_RS06245 WP_410689891.1 1213072..1213992(-) (waaF) [Campylobacter lari strain M595a]
ATGAATATTTTTATCAATCTTCCTACTTGGCTTGGCGATGCAGTAATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTAAGTACGGAACTTTTTAAACGTTTTGAAAATGCTCAAGTCT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAACCTTGGCAAATTTGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTTATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCGCATTTTGGAAGTGCTAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGTTCAACTCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCGTTTTCTTTTAAAAGAAGACATAAAAGCAAAAAATCTTTGTGGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGTTCTACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAGTGCTAAAATAGCTCA
TCTTGATCTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCATAAATGTATGAAAGACTTAAGCCCTG
ATGTGGTAATAAATTTAGCAAAAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.217

100

0.657

Multiple sequence alignment