Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC5098_RS05075 Genome accession   NZ_CP176587
Coordinates   954931..955584 (+) Length   217 a.a.
NCBI ID   WP_258107532.1    Uniprot ID   -
Organism   Campylobacter lari strain 2a     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 949931..960584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5098_RS05050 (UPTC5098_00996) - 950034..951554 (-) 1521 WP_258107526.1 inorganic phosphate transporter -
  UPTC5098_RS05055 (UPTC5098_00997) pdxA 951601..952701 (-) 1101 WP_258107527.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC5098_RS05060 (UPTC5098_00998) - 952698..953465 (-) 768 WP_258107529.1 pyridoxine 5'-phosphate synthase -
  UPTC5098_RS05065 (UPTC5098_00999) - 953521..954480 (+) 960 WP_258107530.1 Ppx/GppA family phosphatase -
  UPTC5098_RS05070 (UPTC5098_01000) - 954491..954934 (+) 444 WP_258107531.1 GatB/YqeY domain-containing protein -
  UPTC5098_RS05075 (UPTC5098_01001) CJE0566 954931..955584 (+) 654 WP_258107532.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5098_RS05080 (UPTC5098_01002) dnaK 955615..957477 (-) 1863 WP_039628415.1 molecular chaperone DnaK -
  UPTC5098_RS05085 (UPTC5098_01003) grpE 957500..958009 (-) 510 WP_114640401.1 nucleotide exchange factor GrpE -
  UPTC5098_RS05090 (UPTC5098_01004) - 958006..958788 (-) 783 WP_258107533.1 HrcA family transcriptional regulator -
  UPTC5098_RS05095 - 959029..959160 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC5098_RS05100 (UPTC5098_01005) - 959149..959778 (-) 630 WP_258107534.1 hypothetical protein -
  UPTC5098_RS05105 (UPTC5098_01006) - 959775..960011 (-) 237 WP_258107535.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25902.88 Da        Isoelectric Point: 9.7891

>NTDB_id=1081179 UPTC5098_RS05075 WP_258107532.1 954931..955584(+) (CJE0566) [Campylobacter lari strain 2a]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPKFKDDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYIKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081179 UPTC5098_RS05075 WP_258107532.1 954931..955584(+) (CJE0566) [Campylobacter lari strain 2a]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AAGCAATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAAATTTAAAGATGATACC
AATATTCCTAAAAAGTATAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGACATGTCGTGCCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAATATCACTCCGCAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAACAACATAGCCATTCCTAGTTTTTATATCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

59.908

100

0.599
  CJE1441 Campylobacter jejuni RM1221

62.687

92.627

0.581

Multiple sequence alignment