Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC5089_RS04475 Genome accession   NZ_CP176586
Coordinates   862077..862730 (+) Length   217 a.a.
NCBI ID   WP_047208365.1    Uniprot ID   A0A5L4JPI8
Organism   Campylobacter lari strain S3:65     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 857077..867730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5089_RS04450 (UPTC5089_00882) - 857180..858700 (-) 1521 WP_039628409.1 inorganic phosphate transporter -
  UPTC5089_RS04455 (UPTC5089_00883) pdxA 858747..859847 (-) 1101 WP_257927466.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC5089_RS04460 (UPTC5089_00884) - 859844..860611 (-) 768 WP_257927465.1 pyridoxine 5'-phosphate synthase -
  UPTC5089_RS04465 (UPTC5089_00885) - 860667..861626 (+) 960 WP_257927464.1 Ppx/GppA family phosphatase -
  UPTC5089_RS04470 (UPTC5089_00886) - 861637..862080 (+) 444 WP_257927463.1 GatB/YqeY domain-containing protein -
  UPTC5089_RS04475 (UPTC5089_00887) CJE0566 862077..862730 (+) 654 WP_047208365.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5089_RS04480 (UPTC5089_00888) dnaK 862762..864624 (-) 1863 WP_039641669.1 molecular chaperone DnaK -
  UPTC5089_RS04485 (UPTC5089_00889) grpE 864647..865156 (-) 510 WP_087685043.1 nucleotide exchange factor GrpE -
  UPTC5089_RS04490 (UPTC5089_00890) - 865153..865935 (-) 783 WP_257927462.1 HrcA family transcriptional regulator -
  UPTC5089_RS04495 - 866174..866305 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC5089_RS04500 (UPTC5089_00891) - 866294..866923 (-) 630 WP_257927461.1 hypothetical protein -
  UPTC5089_RS04505 (UPTC5089_00892) - 866920..867156 (-) 237 WP_039626390.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25930.85 Da        Isoelectric Point: 9.7361

>NTDB_id=1081161 UPTC5089_RS04475 WP_047208365.1 862077..862730(+) (CJE0566) [Campylobacter lari strain S3:65]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081161 UPTC5089_RS04475 WP_047208365.1 862077..862730(+) (CJE0566) [Campylobacter lari strain S3:65]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCTATTGCTTATAAACTAGAGGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAACAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L4JPI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

59.447

100

0.594
  CJE1441 Campylobacter jejuni RM1221

62.687

92.627

0.581

Multiple sequence alignment