Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   UPTC5089_RS01570 Genome accession   NZ_CP176586
Coordinates   286296..287474 (+) Length   392 a.a.
NCBI ID   WP_257927642.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:65     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 281296..292474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5089_RS01555 (UPTC5089_00311) - 282011..282736 (+) 726 WP_257927640.1 class II aldolase/adducin family protein -
  UPTC5089_RS01560 (UPTC5089_00312) - 282738..284234 (+) 1497 WP_257927681.1 sugar phosphate nucleotidyltransferase -
  UPTC5089_RS01565 (UPTC5089_00313) - 284272..286299 (+) 2028 WP_257927641.1 capsular polysaccharide biosynthesis protein -
  UPTC5089_RS01570 (UPTC5089_00314) kpsS 286296..287474 (+) 1179 WP_257927642.1 capsule biosynthesis protein Regulator
  UPTC5089_RS01575 (UPTC5089_00315) - 287471..288979 (-) 1509 WP_257927643.1 hypothetical protein -
  UPTC5089_RS01580 (UPTC5089_00316) - 289141..290271 (+) 1131 WP_257927644.1 DUF829 domain-containing protein -
  UPTC5089_RS01585 (UPTC5089_00317) - 290281..291654 (+) 1374 WP_173776760.1 cytochrome P450 -
  UPTC5089_RS01590 (UPTC5089_00318) - 291651..292004 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46488.15 Da        Isoelectric Point: 10.1995

>NTDB_id=1081158 UPTC5089_RS01570 WP_257927642.1 286296..287474(+) (kpsS) [Campylobacter lari strain S3:65]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPQAKVYKVNFNGGDFFFYPFKSINYTKSLAKLEDFYKKLFEEKQIQV
VIMYNDCRKVHEIAINVAKQMGIEIWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFRNM
AFASFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILFLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLIFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDVVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1081158 UPTC5089_RS01570 WP_257927642.1 286296..287474(+) (kpsS) [Campylobacter lari strain S3:65]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTACTCCAAGGACCTGTGGGAGGATTTTTTCG
TAAAATTGCTACAAAAATTCCACAAGCTAAGGTTTATAAAGTAAATTTTAATGGTGGAGATTTTTTCTTTTATCCTTTTA
AGAGTATTAATTATACTAAAAGTTTAGCCAAGCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
GTTATTATGTACAATGATTGTAGAAAAGTACATGAAATAGCCATTAATGTAGCTAAGCAAATGGGTATTGAAATATGGAT
TTTTGAAGAAGGTTATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCAACTCTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGACAAAGATTTTAAATTTAAAACTTTCTCAAGTACTTTTAGAAATATG
GCCTTTGCTTCGTTTTTATACTGGCTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGCTT
AAAATTATTTGACTTTTTACCTTGGCTTTGCTCAGTATATAGAAAAAATAAATACAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTTTCTAAAACAAAAGTATTTTTTAGCTATTTTACAAGTGCATAATGATACTCAACTATCCCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAAGTGATTATCTCTTTTGCTAATCATGCCAAAGCAAAGTCTTATTTAATTTT
TAAACACCATCCCATGGATCGTGGTTATAGGGACTATACTAAACTTATAGAAGATTTGAGTTTAAAATACAATGTCGAGG
GTAGAATTTTATATGTGCACGATTTACACTTACCTACGCTCTTAATCAATGCAAGAGGCACTATAGTGATAAATAGCACA
GTAGGACTTTCTGCTTTATATCACAATAGTCCTTTGAAGGTTATGGGAAAAGCTTTTTATGATATAGAAGGTTTGACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGAGCATATAAACCTGATGTGGTTTTACATGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTTAATGGGAATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.374

100

0.63

Multiple sequence alignment