Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC5084_RS05205 Genome accession   NZ_CP176585
Coordinates   971561..972214 (+) Length   217 a.a.
NCBI ID   WP_257941788.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:34     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 966561..977214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5084_RS05180 (UPTC5084_01019) - 966664..968184 (-) 1521 WP_257941793.1 inorganic phosphate transporter -
  UPTC5084_RS05185 (UPTC5084_01020) pdxA 968231..969331 (-) 1101 WP_257941792.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC5084_RS05190 (UPTC5084_01021) - 969328..970095 (-) 768 WP_257941791.1 pyridoxine 5'-phosphate synthase -
  UPTC5084_RS05195 (UPTC5084_01022) - 970151..971110 (+) 960 WP_257941790.1 Ppx/GppA family phosphatase -
  UPTC5084_RS05200 (UPTC5084_01023) - 971121..971564 (+) 444 WP_257941789.1 GatB/YqeY domain-containing protein -
  UPTC5084_RS05205 (UPTC5084_01024) CJE0566 971561..972214 (+) 654 WP_257941788.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5084_RS05210 (UPTC5084_01025) dnaK 972246..974108 (-) 1863 WP_114640400.1 molecular chaperone DnaK -
  UPTC5084_RS05215 (UPTC5084_01026) grpE 974131..974640 (-) 510 WP_257396661.1 nucleotide exchange factor GrpE -
  UPTC5084_RS05220 (UPTC5084_01027) - 974637..975419 (-) 783 WP_257941787.1 HrcA family transcriptional regulator -
  UPTC5084_RS05225 - 975659..975790 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC5084_RS05230 (UPTC5084_01028) - 975779..976408 (-) 630 WP_257941786.1 hypothetical protein -
  UPTC5084_RS05235 (UPTC5084_01029) - 976405..976641 (-) 237 WP_257941785.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25916.82 Da        Isoelectric Point: 9.7361

>NTDB_id=1081144 UPTC5084_RS05205 WP_257941788.1 971561..972214(+) (CJE0566) [Campylobacter lari strain S3:34]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHVKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081144 UPTC5084_RS05205 WP_257941788.1 971561..972214(+) (CJE0566) [Campylobacter lari strain S3:34]
ATGAAAAAAGTTTTAACACTTTGTGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAGTTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAGGGTACCA
AGGCTATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACACGTCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCCAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCGCAAGCTCAACTTAGTACTTTTTTAATGAGCAATATCACTCCGCAAAAAAAAGATATCAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAATAACATAGCTATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTTCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment