Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   UPTC5084_RS03165 Genome accession   NZ_CP176585
Coordinates   585473..586147 (-) Length   224 a.a.
NCBI ID   WP_257941553.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:34     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 580473..591147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5084_RS03120 (UPTC5084_00621) - 581008..581868 (-) 861 WP_257941551.1 lambda-exonuclease family protein -
  UPTC5084_RS03125 (UPTC5084_00622) - 581858..582109 (-) 252 WP_047208136.1 hypothetical protein -
  UPTC5084_RS03130 (UPTC5084_00623) - 582109..582312 (-) 204 WP_039625728.1 hypothetical protein -
  UPTC5084_RS03135 (UPTC5084_00625) - 582914..583189 (-) 276 WP_257939477.1 hypothetical protein -
  UPTC5084_RS03140 - 583241..583390 (+) 150 WP_167348867.1 hypothetical protein -
  UPTC5084_RS03145 (UPTC5084_00626) - 583371..583562 (-) 192 WP_039625732.1 hypothetical protein -
  UPTC5084_RS03150 (UPTC5084_00627) - 583727..584497 (+) 771 WP_257941552.1 SEL1-like repeat protein -
  UPTC5084_RS03155 (UPTC5084_00628) - 584513..584800 (-) 288 WP_039625734.1 hypothetical protein -
  UPTC5084_RS03160 (UPTC5084_00629) - 584791..585306 (-) 516 WP_039625735.1 Panacea domain-containing protein -
  UPTC5084_RS03165 (UPTC5084_00630) CJE1441 585473..586147 (-) 675 WP_257941553.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5084_RS03170 (UPTC5084_00631) - 586144..586959 (-) 816 WP_257941554.1 hypothetical protein -
  UPTC5084_RS03175 (UPTC5084_00632) - 586949..587188 (-) 240 WP_044780045.1 hypothetical protein -
  UPTC5084_RS03180 (UPTC5084_00633) - 587277..587999 (-) 723 WP_257941555.1 S24 family peptidase -
  UPTC5084_RS03185 (UPTC5084_00634) - 588112..588333 (+) 222 WP_039625743.1 hypothetical protein -
  UPTC5084_RS03190 (UPTC5084_00635) - 588330..588512 (+) 183 WP_087685558.1 hypothetical protein -
  UPTC5084_RS03195 - 588509..588658 (-) 150 WP_158100226.1 hypothetical protein -
  UPTC5084_RS03200 (UPTC5084_00636) - 588870..589856 (+) 987 WP_257941556.1 hypothetical protein -
  UPTC5084_RS03205 (UPTC5084_00637) - 589864..590529 (+) 666 WP_257939466.1 hypothetical protein -
  UPTC5084_RS03210 (UPTC5084_00638) - 590526..590912 (+) 387 WP_257941557.1 RusA family crossover junction endodeoxyribonuclease -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26322.03 Da        Isoelectric Point: 9.8066

>NTDB_id=1081143 UPTC5084_RS03165 WP_257941553.1 585473..586147(-) (CJE1441) [Campylobacter lari strain S3:34]
MKKLIILPLLTTLALADYTQYKPSEDFAKYFTKQNCSQILDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKCPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPQRIKNQIAIPNSYIKIIKGNNFKECYKVPNYEVDNLSIKRYKFNCDVLTSNNHQS

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1081143 UPTC5084_RS03165 WP_257941553.1 585473..586147(-) (CJE1441) [Campylobacter lari strain S3:34]
ATGAAAAAACTTATAATTTTACCACTATTAACAACTCTAGCCTTAGCTGATTACACACAATACAAGCCAAGTGAAGATTT
TGCAAAATATTTTACTAAACAAAACTGCTCTCAAATTTTAGATAAATTTTATTATATTAATTGCTATGATTATAACTACA
AAGGTACTAAAGCGGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAATGCCCGCGCTTTGAA
GATGATACAAATATACCTAAAAAATATCGTACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACATACCCT
TTCTAATGCCTCTATGAGAAAAACTACTCAAGCTCAAAGAAGTACATTCTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTAGTTAATTATGATAGCAACCCTCAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTATATCAAGATTATAAA
AGGTAATAATTTTAAAGAATGCTATAAAGTCCCAAATTATGAAGTCGATAATTTAAGTATAAAAAGATATAAGTTTAATT
GTGATGTTTTAACTAGCAATAATCATCAGTCTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

86.977

95.982

0.835
  CJE0566 Campylobacter jejuni RM1221

86.512

95.982

0.83

Multiple sequence alignment