Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC5083_RS04545 Genome accession   NZ_CP176584
Coordinates   883608..884261 (+) Length   217 a.a.
NCBI ID   WP_087685044.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:26     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 878608..889261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5083_RS04520 (UPTC5083_00901) - 878711..880231 (-) 1521 WP_257936482.1 inorganic phosphate transporter -
  UPTC5083_RS04525 (UPTC5083_00902) pdxA 880278..881378 (-) 1101 WP_257936483.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC5083_RS04530 (UPTC5083_00903) - 881375..882142 (-) 768 WP_039628411.1 pyridoxine 5'-phosphate synthase -
  UPTC5083_RS04535 (UPTC5083_00904) - 882198..883157 (+) 960 WP_257936484.1 Ppx/GppA family phosphatase -
  UPTC5083_RS04540 (UPTC5083_00905) - 883168..883611 (+) 444 WP_257936485.1 GatB/YqeY domain-containing protein -
  UPTC5083_RS04545 (UPTC5083_00906) CJE0566 883608..884261 (+) 654 WP_087685044.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5083_RS04550 (UPTC5083_00907) dnaK 884293..886155 (-) 1863 WP_039641669.1 molecular chaperone DnaK -
  UPTC5083_RS04555 (UPTC5083_00908) grpE 886178..886687 (-) 510 WP_257936486.1 nucleotide exchange factor GrpE -
  UPTC5083_RS04560 (UPTC5083_00909) - 886684..887466 (-) 783 WP_039641676.1 HrcA family transcriptional regulator -
  UPTC5083_RS04565 - 887706..887837 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC5083_RS04570 (UPTC5083_00910) - 887826..888455 (-) 630 WP_257936487.1 hypothetical protein -
  UPTC5083_RS04575 (UPTC5083_00911) - 888452..888688 (-) 237 WP_039626390.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25911.80 Da        Isoelectric Point: 9.6672

>NTDB_id=1081126 UPTC5083_RS04545 WP_087685044.1 883608..884261(+) (CJE0566) [Campylobacter lari strain S3:26]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKHIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081126 UPTC5083_RS04545 WP_087685044.1 883608..884261(+) (CJE0566) [Campylobacter lari strain S3:26]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACCCAATATGAATTGCATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATTCCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAACAAAGAACTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACACATTAAAAACAATATAGCTATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment