Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC5079_RS04840 Genome accession   NZ_CP176583
Coordinates   937717..938370 (+) Length   217 a.a.
NCBI ID   WP_047208365.1    Uniprot ID   A0A5L4JPI8
Organism   Campylobacter lari strain MO18     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 932717..943370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5079_RS04815 (UPTC5079_000955) - 932820..934340 (-) 1521 WP_257938453.1 inorganic phosphate transporter -
  UPTC5079_RS04820 (UPTC5079_000956) pdxA 934387..935487 (-) 1101 WP_257938454.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC5079_RS04825 (UPTC5079_000957) - 935484..936251 (-) 768 WP_214124833.1 pyridoxine 5'-phosphate synthase -
  UPTC5079_RS04830 (UPTC5079_000958) - 936307..937266 (+) 960 WP_257938455.1 Ppx/GppA family phosphatase -
  UPTC5079_RS04835 (UPTC5079_000959) - 937277..937720 (+) 444 WP_257938456.1 GatB/YqeY domain-containing protein -
  UPTC5079_RS04840 (UPTC5079_000960) CJE0566 937717..938370 (+) 654 WP_047208365.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5079_RS04845 (UPTC5079_000961) dnaK 938402..940264 (-) 1863 WP_039628415.1 molecular chaperone DnaK -
  UPTC5079_RS04850 (UPTC5079_000962) grpE 940287..940796 (-) 510 WP_087685043.1 nucleotide exchange factor GrpE -
  UPTC5079_RS04855 (UPTC5079_000963) - 940793..941575 (-) 783 WP_039641676.1 HrcA family transcriptional regulator -
  UPTC5079_RS04860 - 941816..941947 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC5079_RS04865 (UPTC5079_000964) - 941936..942565 (-) 630 WP_214127373.1 hypothetical protein -
  UPTC5079_RS04870 (UPTC5079_000965) - 942562..942798 (-) 237 WP_039641679.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25930.85 Da        Isoelectric Point: 9.7361

>NTDB_id=1081109 UPTC5079_RS04840 WP_047208365.1 937717..938370(+) (CJE0566) [Campylobacter lari strain MO18]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081109 UPTC5079_RS04840 WP_047208365.1 937717..938370(+) (CJE0566) [Campylobacter lari strain MO18]
ATGAAAAAAGTTTTGACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACCCAATATGAATTGCATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATTCCTAAAAAGTACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAACAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L4JPI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

59.447

100

0.594
  CJE1441 Campylobacter jejuni RM1221

62.687

92.627

0.581

Multiple sequence alignment