Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   UPTC5055_RS03185 Genome accession   NZ_CP176582
Coordinates   605496..606170 (-) Length   224 a.a.
NCBI ID   WP_257943594.1    Uniprot ID   -
Organism   Campylobacter lari strain 257     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 600496..611170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5055_RS03140 (UPTC5055_000623) - 600514..601230 (-) 717 WP_257943590.1 hypothetical protein -
  UPTC5055_RS03145 (UPTC5055_000624) - 601232..602092 (-) 861 WP_257943591.1 lambda-exonuclease family protein -
  UPTC5055_RS03150 (UPTC5055_000625) - 602082..602333 (-) 252 WP_039625727.1 hypothetical protein -
  UPTC5055_RS03155 (UPTC5055_000626) - 602333..602536 (-) 204 WP_039625728.1 hypothetical protein -
  UPTC5055_RS03160 (UPTC5055_000627) - 603125..603400 (-) 276 WP_257939477.1 hypothetical protein -
  UPTC5055_RS03165 (UPTC5055_000628) - 603556..603792 (+) 237 WP_257943592.1 hypothetical protein -
  UPTC5055_RS03170 (UPTC5055_000629) - 603859..604335 (+) 477 WP_257943593.1 hypothetical protein -
  UPTC5055_RS03175 (UPTC5055_000630) - 604456..604743 (-) 288 WP_039625734.1 hypothetical protein -
  UPTC5055_RS03180 (UPTC5055_000631) - 604734..605249 (-) 516 WP_039625735.1 Panacea domain-containing protein -
  UPTC5055_RS03185 (UPTC5055_000632) CJE1441 605496..606170 (-) 675 WP_257943594.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5055_RS03190 (UPTC5055_000633) - 606167..606982 (-) 816 WP_257943595.1 hypothetical protein -
  UPTC5055_RS03195 (UPTC5055_000634) - 606972..607211 (-) 240 WP_044780045.1 hypothetical protein -
  UPTC5055_RS03200 (UPTC5055_000635) - 607300..608022 (-) 723 WP_257943596.1 S24 family peptidase -
  UPTC5055_RS03205 (UPTC5055_000636) - 608135..608356 (+) 222 WP_039625743.1 hypothetical protein -
  UPTC5055_RS03210 (UPTC5055_000637) - 608353..608541 (+) 189 WP_214115107.1 hypothetical protein -
  UPTC5055_RS03215 (UPTC5055_000638) - 608926..609912 (+) 987 WP_257943597.1 hypothetical protein -
  UPTC5055_RS03220 (UPTC5055_000639) - 609920..610549 (+) 630 WP_257943598.1 hypothetical protein -
  UPTC5055_RS03225 (UPTC5055_000640) - 610583..610969 (+) 387 WP_039625747.1 endodeoxyribonuclease RusA-like protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26375.08 Da        Isoelectric Point: 9.9332

>NTDB_id=1081090 UPTC5055_RS03185 WP_257943594.1 605496..606170(-) (CJE1441) [Campylobacter lari strain 257]
MKKLIILPLLTTLALADYTQYKPSEDFAKYFTKQNCSQILDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPQRIKNQIAIPNSYIKIIKGNNFKECYKVPNYEVDNLSIKRYKFNCDVLTSNNHQS

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1081090 UPTC5055_RS03185 WP_257943594.1 605496..606170(-) (CJE1441) [Campylobacter lari strain 257]
ATGAAAAAACTTATAATTTTACCACTATTAACAACTCTAGCCTTAGCTGATTACACACAATACAAGCCAAGTGAAGATTT
TGCAAAATATTTTACTAAACAAAACTGCTCTCAAATTTTAGATAAATTTTATTATATTAATTGCTATGATTATAACTACA
AAGGTACTAAAGCGGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCGCGCTTTGAA
GATGATACAAATATACCTAAAAAATATCGTACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACATACCCT
TTCTAATGCCTCTATGAGAAAAACTACTCAAGCTCAAAGAAGTACATTCTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTAGTTAATTATGATAGCAACCCTCAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTATATCAAGATTATAAA
AGGTAATAATTTTAAAGAATGCTATAAAGTCCCAAATTATGAAGTCGATAATTTAAGTATAAAAAGATATAAGTTTAATT
GTGATGTTTTAACTAGCAATAATCATCAGTCTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

87.442

95.982

0.839
  CJE0566 Campylobacter jejuni RM1221

86.977

95.982

0.835

Multiple sequence alignment