Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC5050_RS04905 Genome accession   NZ_CP176581
Coordinates   944533..945186 (+) Length   217 a.a.
NCBI ID   WP_257937780.1    Uniprot ID   -
Organism   Campylobacter lari strain S3:81     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 939533..950186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5050_RS04880 (UPTC5050_0955) - 939631..941151 (-) 1521 WP_214119129.1 inorganic phosphate transporter -
  UPTC5050_RS04885 (UPTC5050_0956) pdxA 941203..942303 (-) 1101 WP_039641659.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC5050_RS04890 (UPTC5050_0957) - 942300..943067 (-) 768 WP_214114766.1 pyridoxine 5'-phosphate synthase -
  UPTC5050_RS04895 (UPTC5050_0958) - 943123..944082 (+) 960 WP_257937778.1 Ppx/GppA family phosphatase -
  UPTC5050_RS04900 (UPTC5050_0959) - 944093..944536 (+) 444 WP_257937779.1 GatB/YqeY domain-containing protein -
  UPTC5050_RS04905 (UPTC5050_0960) CJE0566 944533..945186 (+) 654 WP_257937780.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5050_RS04910 (UPTC5050_0961) dnaK 945218..947080 (-) 1863 WP_039628415.1 molecular chaperone DnaK -
  UPTC5050_RS04915 (UPTC5050_0962) grpE 947103..947612 (-) 510 WP_087685043.1 nucleotide exchange factor GrpE -
  UPTC5050_RS04920 (UPTC5050_0963) - 947609..948391 (-) 783 WP_039641676.1 HrcA family transcriptional regulator -
  UPTC5050_RS04925 - 948631..948762 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC5050_RS04930 (UPTC5050_0964) - 948751..949380 (-) 630 WP_214127373.1 hypothetical protein -
  UPTC5050_RS04935 (UPTC5050_0965) - 949377..949613 (-) 237 WP_039641679.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25930.85 Da        Isoelectric Point: 9.7361

>NTDB_id=1081073 UPTC5050_RS04905 WP_257937780.1 944533..945186(+) (CJE0566) [Campylobacter lari strain S3:81]
MKKVLALCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSSYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1081073 UPTC5050_RS04905 WP_257937780.1 944533..945186(+) (CJE0566) [Campylobacter lari strain S3:81]
ATGAAAAAAGTTTTAGCACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCCATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATTCCTAAAAAGTACAGAACTTATTGGGAGGATTATTTAAGAAGTAGTTATACAAGAGGACATGTCGTGCCAAATCA
ATCCATGAATGCAACCCCACAAGCTCAACTTAGCACTTTTTTAATGAGCAACATAACTCCGCAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAACAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment