Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACKZ7V_RS11135 Genome accession   NZ_CP176566
Coordinates   2263148..2263834 (-) Length   228 a.a.
NCBI ID   WP_111762346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IMT37083     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2258148..2268834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7V_RS11115 (ACKZ7V_11115) rpsT 2259062..2259313 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACKZ7V_RS11120 (ACKZ7V_11120) holA 2259358..2260332 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACKZ7V_RS11125 (ACKZ7V_11125) comEC 2260389..2262590 (-) 2202 WP_187418237.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACKZ7V_RS11130 (ACKZ7V_11130) - 2262595..2263056 (-) 462 WP_000439693.1 ComE operon protein 2 -
  ACKZ7V_RS11135 (ACKZ7V_11135) comEA 2263148..2263834 (-) 687 WP_111762346.1 ComEA family DNA-binding protein Machinery gene
  ACKZ7V_RS11140 (ACKZ7V_11140) - 2263874..2264590 (-) 717 WP_111762347.1 class I SAM-dependent DNA methyltransferase -
  ACKZ7V_RS11145 (ACKZ7V_11145) rsfS 2264593..2264946 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACKZ7V_RS11150 (ACKZ7V_11150) yqeK 2264947..2265531 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACKZ7V_RS11155 (ACKZ7V_11155) nadD 2265521..2266090 (-) 570 WP_111762348.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACKZ7V_RS11160 (ACKZ7V_11160) yhbY 2266093..2266383 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  ACKZ7V_RS11165 (ACKZ7V_11165) aroE 2266387..2267193 (-) 807 WP_148843561.1 shikimate dehydrogenase -
  ACKZ7V_RS11170 (ACKZ7V_11170) yqeH 2267207..2268307 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25727.43 Da        Isoelectric Point: 9.6753

>NTDB_id=1080951 ACKZ7V_RS11135 WP_111762346.1 2263148..2263834(-) (comEA) [Staphylococcus aureus strain IMT37083]
MVLLYQILLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1080951 ACKZ7V_RS11135 WP_111762346.1 2263148..2263834(-) (comEA) [Staphylococcus aureus strain IMT37083]
GTGGTTTTATTGTATCAAATTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

98.238

99.561

0.978

Multiple sequence alignment