Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACKZ7V_RS05740 Genome accession   NZ_CP176566
Coordinates   1162331..1162900 (+) Length   189 a.a.
NCBI ID   WP_111761962.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IMT37083     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157331..1167900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7V_RS05715 (ACKZ7V_05715) cysE 1158544..1159191 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACKZ7V_RS05720 (ACKZ7V_05720) cysS 1159175..1160575 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  ACKZ7V_RS05725 (ACKZ7V_05725) - 1160568..1160972 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACKZ7V_RS05730 (ACKZ7V_05730) rlmB 1160980..1161726 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACKZ7V_RS05735 (ACKZ7V_05735) - 1161726..1162250 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACKZ7V_RS05740 (ACKZ7V_05740) sigH 1162331..1162900 (+) 570 WP_111761962.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACKZ7V_RS05745 (ACKZ7V_05745) rpmG 1163015..1163158 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACKZ7V_RS05750 (ACKZ7V_05750) secE 1163214..1163396 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACKZ7V_RS05755 (ACKZ7V_05755) nusG 1163409..1163957 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACKZ7V_RS05760 (ACKZ7V_05760) rplK 1164138..1164560 (+) 423 WP_111761963.1 50S ribosomal protein L11 -
  ACKZ7V_RS05765 (ACKZ7V_05765) rplA 1164768..1165460 (+) 693 WP_148843663.1 50S ribosomal protein L1 -
  ACKZ7V_RS05770 (ACKZ7V_05770) rplJ 1165732..1166232 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACKZ7V_RS05775 (ACKZ7V_05775) rplL 1166275..1166643 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACKZ7V_RS05780 (ACKZ7V_05780) - 1166818..1167426 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23067.93 Da        Isoelectric Point: 9.6015

>NTDB_id=1080930 ACKZ7V_RS05740 WP_111761962.1 1162331..1162900(+) (sigH) [Staphylococcus aureus strain IMT37083]
MKYDLTTQDGTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1080930 ACKZ7V_RS05740 WP_111761962.1 1162331..1162900(+) (sigH) [Staphylococcus aureus strain IMT37083]
TTGAAATACGATTTGACAACTCAAGACGGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment