Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACKZ7S_RS10715 Genome accession   NZ_CP176565
Coordinates   2148360..2148755 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V0353     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2143360..2153755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7S_RS10690 (ACKZ7S_10690) thiE 2143959..2144600 (-) 642 WP_162635981.1 thiamine phosphate synthase -
  ACKZ7S_RS10695 (ACKZ7S_10695) thiM 2144602..2145393 (-) 792 WP_162635980.1 hydroxyethylthiazole kinase -
  ACKZ7S_RS10700 (ACKZ7S_10700) thiD 2145377..2146207 (-) 831 WP_162635979.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACKZ7S_RS10705 (ACKZ7S_10705) tenA 2146200..2146889 (-) 690 WP_000396067.1 thiaminase II -
  ACKZ7S_RS10710 (ACKZ7S_10710) sceD 2147276..2147971 (-) 696 WP_162635978.1 lytic transglycosylase SceD -
  ACKZ7S_RS10715 (ACKZ7S_10715) ssb 2148360..2148755 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACKZ7S_RS10720 (ACKZ7S_10720) - 2148949..2149389 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACKZ7S_RS10725 (ACKZ7S_10725) fabZ 2149446..2149886 (-) 441 WP_162635977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACKZ7S_RS10730 (ACKZ7S_10730) murA 2149920..2151185 (-) 1266 WP_162635976.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACKZ7S_RS10735 (ACKZ7S_10735) - 2151296..2151529 (-) 234 WP_111045914.1 DUF1146 family protein -
  ACKZ7S_RS10740 (ACKZ7S_10740) - 2151661..2151754 (-) 94 Protein_2075 hypothetical protein -
  ACKZ7S_RS10745 (ACKZ7S_10745) - 2152149..2152553 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1080919 ACKZ7S_RS10715 WP_000932694.1 2148360..2148755(-) (ssb) [Staphylococcus aureus strain V0353]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1080919 ACKZ7S_RS10715 WP_000932694.1 2148360..2148755(-) (ssb) [Staphylococcus aureus strain V0353]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment