Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACKZ7S_RS03000 Genome accession   NZ_CP176565
Coordinates   595935..596504 (+) Length   189 a.a.
NCBI ID   WP_000872871.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V0353     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 590935..601504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7S_RS02975 (ACKZ7S_02975) cysE 592148..592795 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACKZ7S_RS02980 (ACKZ7S_02980) cysS 592779..594179 (+) 1401 WP_162636314.1 cysteine--tRNA ligase -
  ACKZ7S_RS02985 (ACKZ7S_02985) - 594172..594576 (+) 405 WP_162636316.1 ribonuclease III domain-containing protein -
  ACKZ7S_RS02990 (ACKZ7S_02990) rlmB 594584..595330 (+) 747 WP_000390331.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACKZ7S_RS02995 (ACKZ7S_02995) - 595330..595854 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACKZ7S_RS03000 (ACKZ7S_03000) sigH 595935..596504 (+) 570 WP_000872871.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACKZ7S_RS03005 (ACKZ7S_03005) rpmG 596619..596762 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACKZ7S_RS03010 (ACKZ7S_03010) secE 596818..597000 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACKZ7S_RS03015 (ACKZ7S_03015) nusG 597013..597561 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACKZ7S_RS03020 (ACKZ7S_03020) rplK 597742..598164 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACKZ7S_RS03025 (ACKZ7S_03025) rplA 598372..599064 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACKZ7S_RS03030 (ACKZ7S_03030) rplJ 599336..599836 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACKZ7S_RS03035 (ACKZ7S_03035) rplL 599880..600248 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACKZ7S_RS03040 (ACKZ7S_03040) - 600423..601031 (+) 609 WP_162636318.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23048.88 Da        Isoelectric Point: 9.6253

>NTDB_id=1080890 ACKZ7S_RS03000 WP_000872871.1 595935..596504(+) (sigH) [Staphylococcus aureus strain V0353]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKNLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1080890 ACKZ7S_RS03000 WP_000872871.1 595935..596504(+) (sigH) [Staphylococcus aureus strain V0353]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCAGTAAAGTATGATTATTTGAGAAAAAATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAAAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment