Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACKZ7T_RS11230 Genome accession   NZ_CP176564
Coordinates   2237795..2238190 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V0641     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2232795..2243190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7T_RS11205 (ACKZ7T_11205) thiE 2233394..2234035 (-) 642 WP_000483160.1 thiamine phosphate synthase -
  ACKZ7T_RS11210 (ACKZ7T_11210) thiM 2234037..2234828 (-) 792 WP_250415313.1 hydroxyethylthiazole kinase -
  ACKZ7T_RS11215 (ACKZ7T_11215) thiD 2234812..2235642 (-) 831 WP_115211408.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACKZ7T_RS11220 (ACKZ7T_11220) tenA 2235635..2236324 (-) 690 WP_409481410.1 thiaminase II -
  ACKZ7T_RS11225 (ACKZ7T_11225) sceD 2236711..2237406 (-) 696 WP_000751999.1 lytic transglycosylase SceD -
  ACKZ7T_RS11230 (ACKZ7T_11230) ssb 2237795..2238190 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACKZ7T_RS11235 (ACKZ7T_11235) - 2238384..2238824 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACKZ7T_RS11240 (ACKZ7T_11240) fabZ 2238881..2239321 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACKZ7T_RS11245 (ACKZ7T_11245) murA 2239355..2240620 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACKZ7T_RS11250 (ACKZ7T_11250) - 2240731..2240964 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACKZ7T_RS11255 (ACKZ7T_11255) - 2241586..2241990 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1080880 ACKZ7T_RS11230 WP_000932694.1 2237795..2238190(-) (ssb) [Staphylococcus aureus strain V0641]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1080880 ACKZ7T_RS11230 WP_000932694.1 2237795..2238190(-) (ssb) [Staphylococcus aureus strain V0641]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment