Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACKZ7T_RS08375 Genome accession   NZ_CP176564
Coordinates   1705670..1706356 (-) Length   228 a.a.
NCBI ID   WP_072491736.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V0641     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1700670..1711356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7T_RS08355 (ACKZ7T_08355) rpsT 1701584..1701835 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ACKZ7T_RS08360 (ACKZ7T_08360) holA 1701880..1702854 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACKZ7T_RS08365 (ACKZ7T_08365) comEC 1702911..1705112 (-) 2202 WP_409481315.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACKZ7T_RS08370 (ACKZ7T_08370) - 1705117..1705578 (-) 462 WP_409481316.1 ComE operon protein 2 -
  ACKZ7T_RS08375 (ACKZ7T_08375) comEA 1705670..1706356 (-) 687 WP_072491736.1 ComEA family DNA-binding protein Machinery gene
  ACKZ7T_RS08380 (ACKZ7T_08380) - 1706396..1707112 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACKZ7T_RS08385 (ACKZ7T_08385) rsfS 1707115..1707468 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACKZ7T_RS08390 (ACKZ7T_08390) yqeK 1707469..1708053 (-) 585 WP_409481317.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACKZ7T_RS08395 (ACKZ7T_08395) nadD 1708043..1708612 (-) 570 WP_000725160.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACKZ7T_RS08400 (ACKZ7T_08400) yhbY 1708615..1708905 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  ACKZ7T_RS08405 (ACKZ7T_08405) aroE 1708909..1709715 (-) 807 WP_000666752.1 shikimate dehydrogenase -
  ACKZ7T_RS08410 (ACKZ7T_08410) yqeH 1709729..1710829 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25747.42 Da        Isoelectric Point: 9.6753

>NTDB_id=1080869 ACKZ7T_RS08375 WP_072491736.1 1705670..1706356(-) (comEA) [Staphylococcus aureus strain V0641]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLSDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1080869 ACKZ7T_RS08375 WP_072491736.1 1705670..1706356(-) (comEA) [Staphylococcus aureus strain V0641]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTATCAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

98.238

99.561

0.978

Multiple sequence alignment