Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   ACKZ7T_RS08145 Genome accession   NZ_CP176564
Coordinates   1659850..1660920 (-) Length   356 a.a.
NCBI ID   WP_409481312.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V0641     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1654850..1665920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7T_RS08105 (ACKZ7T_08105) gcvPA 1655027..1656373 (-) 1347 WP_250414104.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACKZ7T_RS08110 (ACKZ7T_08110) gcvT 1656393..1657484 (-) 1092 WP_409481309.1 glycine cleavage system aminomethyltransferase GcvT -
  ACKZ7T_RS08115 (ACKZ7T_08115) - 1657643..1658167 (-) 525 WP_115211241.1 shikimate kinase -
  ACKZ7T_RS08120 (ACKZ7T_08120) - 1658157..1658303 (-) 147 WP_001789879.1 hypothetical protein -
  ACKZ7T_RS08125 (ACKZ7T_08125) comGF 1658400..1658897 (-) 498 WP_115211242.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACKZ7T_RS08130 (ACKZ7T_08130) comGE 1658815..1659114 (-) 300 WP_409481310.1 competence protein ComGE Machinery gene
  ACKZ7T_RS08135 (ACKZ7T_08135) comGD 1659101..1659547 (-) 447 WP_409481311.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACKZ7T_RS08140 (ACKZ7T_08140) comGC 1659525..1659836 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACKZ7T_RS08145 (ACKZ7T_08145) comGB 1659850..1660920 (-) 1071 WP_409481312.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACKZ7T_RS08150 (ACKZ7T_08150) comGA 1660892..1661866 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ACKZ7T_RS08155 (ACKZ7T_08155) - 1661919..1662542 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ACKZ7T_RS08160 (ACKZ7T_08160) - 1662539..1662868 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACKZ7T_RS08165 (ACKZ7T_08165) - 1662868..1663854 (-) 987 WP_000161315.1 ROK family glucokinase -
  ACKZ7T_RS08170 (ACKZ7T_08170) - 1663851..1664054 (-) 204 WP_000087561.1 YqgQ family protein -
  ACKZ7T_RS08175 (ACKZ7T_08175) - 1664035..1665498 (-) 1464 WP_044122531.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41535.01 Da        Isoelectric Point: 10.0076

>NTDB_id=1080865 ACKZ7T_RS08145 WP_409481312.1 1659850..1660920(-) (comGB) [Staphylococcus aureus strain V0641]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVFIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKIYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGEYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1080865 ACKZ7T_RS08145 WP_409481312.1 1659850..1660920(-) (comGB) [Staphylococcus aureus strain V0641]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATAATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTTTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATCCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAGTTAATTTACAACAAATTGAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAATTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTGAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAATTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

98.876

100

0.989
  comGB Staphylococcus aureus N315

98.876

100

0.989

Multiple sequence alignment