Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACK2WG_RS15940 Genome accession   NZ_CP176536
Coordinates   3102704..3103348 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus spizizenii strain 29-4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3097704..3108348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS15905 (ACK2WG_15905) - 3098899..3099330 (+) 432 WP_014114977.1 Na(+)/H(+) antiporter subunit B -
  ACK2WG_RS15910 (ACK2WG_15910) - 3099330..3099671 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ACK2WG_RS15915 (ACK2WG_15915) - 3099664..3101145 (+) 1482 WP_041521055.1 Na+/H+ antiporter subunit D -
  ACK2WG_RS15920 (ACK2WG_15920) - 3101151..3101627 (+) 477 WP_014114979.1 Na+/H+ antiporter subunit E -
  ACK2WG_RS15925 (ACK2WG_15925) - 3101627..3101911 (+) 285 WP_014114980.1 Na(+)/H(+) antiporter subunit F1 -
  ACK2WG_RS15930 (ACK2WG_15930) mnhG 3101895..3102269 (+) 375 WP_014114981.1 monovalent cation/H(+) antiporter subunit G -
  ACK2WG_RS15935 (ACK2WG_15935) - 3102308..3102688 (-) 381 WP_003220719.1 hotdog fold thioesterase -
  ACK2WG_RS15940 (ACK2WG_15940) comA 3102704..3103348 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACK2WG_RS15945 (ACK2WG_15945) comP 3103429..3105726 (-) 2298 WP_409509145.1 histidine kinase Regulator
  ACK2WG_RS15950 (ACK2WG_15950) comX 3105734..3105895 (-) 162 WP_010331692.1 competence pheromone ComX -
  ACK2WG_RS15955 (ACK2WG_15955) - 3105909..3106769 (-) 861 WP_268454381.1 polyprenyl synthetase family protein -
  ACK2WG_RS15960 (ACK2WG_15960) degQ 3106954..3107094 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACK2WG_RS15965 (ACK2WG_15965) - 3107316..3107441 (+) 126 WP_014114985.1 hypothetical protein -
  ACK2WG_RS15970 (ACK2WG_15970) - 3107556..3107924 (+) 369 WP_014114986.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1080803 ACK2WG_RS15940 WP_003220716.1 3102704..3103348(-) (comA) [Bacillus spizizenii strain 29-4]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1080803 ACK2WG_RS15940 WP_003220716.1 3102704..3103348(-) (comA) [Bacillus spizizenii strain 29-4]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATATTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTTGAGGATTATTTTGAGGAAGCGATTCGTGCGGGACTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCACTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment