Detailed information NTG1080710

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACFGDV_RS04020
• Genome accession: NZ_CP176528
• Coordinates: 830327..831523 (-)
• Length: 398 a.a.
• NCBI ID: WP_136413307.1
• Uniprot ID: -
• Organism: Noviherbaspirillum sp. ST 5-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 825327..836523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFGDV_RS03995	cyoE	826024..826908 (+)	885	WP_136413315.1	heme o synthase	-
ACFGDV_RS04000	-	826909..827541 (+)	633	WP_168798505.1	SCO family protein	-
ACFGDV_RS04005	rpoH	827611..828501 (-)	891	WP_136413311.1	RNA polymerase sigma factor RpoH	-
ACFGDV_RS04010	-	828722..829648 (-)	927	WP_211097202.1	ABC transporter permease	-
ACFGDV_RS04015	-	829645..830325 (-)	681	WP_136413309.1	cell division ATP-binding protein FtsE	-
ACFGDV_RS04020	pilA	830327..831523 (-)	1197	WP_136413307.1	signal recognition particle-docking protein FtsY	Machinery gene
ACFGDV_RS04025	-	831662..833032 (+)	1371	WP_136413305.1	M16 family metallopeptidase	-
ACFGDV_RS04030	-	833047..834369 (+)	1323	WP_211097220.1	pitrilysin family protein	-
ACFGDV_RS04035	rsmD	834373..835032 (+)	660	WP_136413301.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ACFGDV_RS04040	coaD	835075..835563 (+)	489	WP_136413299.1	pantetheine-phosphate adenylyltransferase	-
ACFGDV_RS04045	-	835606..835863 (+)	258	WP_136413297.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 42489.17 Da
• Isoelectric Point: 6.2677

>NTDB_id=1080710 ACFGDV_RS04020 WP_136413307.1 830327..831523(-) (pilA) [Noviherbaspirillum sp. ST 5-3]
MFSFFKKKPKDTPAAPQEAAPQPSAQEAPVAPVIEPSAPPPAEQKQSWLNLFKKESPTIPAPPVTPEPLPAPPTAAEPLA
TPVVEPEGEIVPPPPPPAEQKRSWMQRLKAGLSKTSSNLTTLFVGAKIDDDLYEELESALLVSDAGVEATQFILDALKKK
VKAEKLTEAEQVKAALRTVLLEILSPLQKPFVLGRHQPLVMMIAGVNGAGKTTTIGKLAKHLQAHHQSVLLAAGDTFRAA
AREQLTIWGERNNVTVIAQESGDPAAVAFDAVQSAKARNLNVVMVDTAGRLPTQLHLMEELKKVKRVIGKGMEGAPHEIL
LVIDGNTGQNALAQVKAFDDALQLTGIVVTKLDGTAKGGVLAAIAKTRPVPVYFIGVGEKIEDLQPFNAEEFVDALLS

Nucleotide

• Length: 1197 bp

>NTDB_id=1080710 ACFGDV_RS04020 WP_136413307.1 830327..831523(-) (pilA) [Noviherbaspirillum sp. ST 5-3]
ATGTTTAGTTTCTTCAAGAAAAAACCGAAAGACACGCCTGCGGCTCCGCAAGAGGCCGCGCCACAGCCGAGCGCACAGGA
GGCTCCGGTAGCACCGGTAATCGAGCCTTCCGCGCCGCCCCCTGCGGAACAGAAGCAGTCCTGGCTAAACCTGTTCAAGA
AGGAATCGCCGACGATTCCGGCTCCGCCCGTCACGCCTGAACCACTTCCAGCTCCACCGACTGCCGCTGAACCCTTGGCG
ACGCCGGTGGTGGAACCCGAAGGAGAAATCGTTCCGCCGCCTCCGCCGCCAGCGGAACAAAAGCGCTCCTGGATGCAGCG
CCTGAAGGCCGGTTTGTCCAAGACGTCGTCGAACCTGACGACGCTGTTCGTCGGCGCGAAGATTGACGACGACCTCTACG
AAGAGCTCGAGTCCGCGCTGCTGGTGTCGGACGCCGGCGTGGAAGCAACCCAGTTCATCCTCGATGCATTGAAAAAGAAG
GTCAAGGCCGAGAAGCTGACCGAAGCCGAGCAAGTCAAAGCCGCCCTGCGCACCGTGCTGCTCGAGATACTGAGCCCGTT
GCAAAAACCCTTCGTCCTCGGACGCCATCAACCGTTGGTGATGATGATTGCCGGCGTCAATGGCGCCGGCAAGACGACGA
CCATCGGCAAGCTCGCCAAGCATCTGCAAGCCCACCATCAATCCGTGCTGCTTGCCGCAGGCGATACCTTTCGCGCGGCT
GCACGTGAGCAGTTGACAATCTGGGGGGAGCGCAACAATGTCACCGTCATTGCGCAGGAATCCGGTGATCCGGCCGCGGT
CGCCTTCGACGCCGTGCAATCGGCGAAAGCACGCAACCTGAACGTCGTGATGGTCGATACGGCCGGTCGGCTACCGACGC
AGTTGCACTTGATGGAAGAGCTGAAAAAAGTGAAGCGCGTCATTGGCAAAGGCATGGAAGGCGCGCCGCATGAAATCCTG
CTGGTCATCGACGGCAACACCGGTCAGAATGCGCTCGCGCAGGTAAAAGCCTTCGACGATGCTTTACAATTGACAGGCAT
TGTCGTGACAAAACTCGATGGCACGGCAAAGGGCGGCGTACTCGCAGCCATTGCGAAGACGCGACCGGTGCCGGTGTACT
TCATTGGCGTGGGTGAGAAGATTGAAGACCTGCAGCCGTTCAATGCAGAGGAATTCGTCGATGCCCTACTGAGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (118-178)

• SRP54-type protein, GTPase domain (SRP54) (199-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.239	100	0.528