Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACKW6F_RS11570 Genome accession   NZ_CP176527
Coordinates   2295234..2295569 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain D-62     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2290234..2300569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKW6F_RS11550 (ACKW6F_11550) gcvT 2290713..2291810 (-) 1098 WP_024427995.1 glycine cleavage system aminomethyltransferase GcvT -
  ACKW6F_RS11555 (ACKW6F_11555) - 2292372..2294042 (+) 1671 WP_024422967.1 DEAD/DEAH box helicase -
  ACKW6F_RS11560 (ACKW6F_11560) - 2294057..2294854 (+) 798 WP_024422968.1 YqhG family protein -
  ACKW6F_RS11565 (ACKW6F_11565) - 2295036..2295200 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  ACKW6F_RS11570 (ACKW6F_11570) sinR 2295234..2295569 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  ACKW6F_RS11575 (ACKW6F_11575) tasA 2295637..2296437 (-) 801 WP_024422970.1 biofilm matrix protein TasA -
  ACKW6F_RS11580 (ACKW6F_11580) sipW 2296492..2297064 (-) 573 WP_024422971.1 signal peptidase I SipW -
  ACKW6F_RS11585 (ACKW6F_11585) tapA 2297117..2297644 (-) 528 WP_024422972.1 amyloid fiber anchoring/assembly protein TapA -
  ACKW6F_RS11590 (ACKW6F_11590) - 2297944..2298222 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  ACKW6F_RS11595 (ACKW6F_11595) - 2298257..2298451 (-) 195 WP_149126478.1 YqzE family protein -
  ACKW6F_RS11600 (ACKW6F_11600) - 2298511..2298894 (-) 384 WP_073206276.1 competence type IV pilus minor pilin ComGG -
  ACKW6F_RS11605 (ACKW6F_11605) comGF 2298891..2299418 (-) 528 WP_335343444.1 competence type IV pilus minor pilin ComGF -
  ACKW6F_RS11610 (ACKW6F_11610) comGE 2299330..2299644 (-) 315 WP_149126477.1 competence type IV pilus minor pilin ComGE -
  ACKW6F_RS11615 (ACKW6F_11615) comGD 2299628..2300074 (-) 447 WP_149126476.1 competence type IV pilus minor pilin ComGD -
  ACKW6F_RS11620 (ACKW6F_11620) comGC 2300067..2300360 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=1080682 ACKW6F_RS11570 WP_024422969.1 2295234..2295569(+) (sinR) [Bacillus safensis strain D-62]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1080682 ACKW6F_RS11570 WP_024422969.1 2295234..2295569(+) (sinR) [Bacillus safensis strain D-62]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment