Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   ACJX3V_RS14910 Genome accession   NZ_CP176523
Coordinates   3026918..3027850 (-) Length   310 a.a.
NCBI ID   WP_025650217.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021918..3032850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS14880 - 3022174..3022650 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  ACJX3V_RS14885 - 3022650..3022934 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  ACJX3V_RS14890 mnhG 3022918..3023292 (+) 375 WP_046560012.1 monovalent cation/H(+) antiporter subunit G -
  ACJX3V_RS14895 - 3023332..3023715 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  ACJX3V_RS14900 comA 3023737..3024381 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACJX3V_RS14905 comP 3024462..3026765 (-) 2304 WP_003152050.1 histidine kinase Regulator
  ACJX3V_RS14910 comQ 3026918..3027850 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  ACJX3V_RS14915 degQ 3028035..3028175 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACJX3V_RS14920 - 3028641..3028982 (+) 342 WP_046560014.1 hypothetical protein -
  ACJX3V_RS14925 - 3028989..3030209 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  ACJX3V_RS14930 - 3030339..3031805 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  ACJX3V_RS14935 - 3031823..3032374 (-) 552 WP_003152033.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35663.80 Da        Isoelectric Point: 5.4532

>NTDB_id=1080634 ACJX3V_RS14910 WP_025650217.1 3026918..3027850(-) (comQ) [Bacillus amyloliquefaciens strain MEPW12]
MKSIIERNIFNEHLMQLLLRFIEPKKNFSLAESAVLHYVIFDGENQETAVNLGAAIEILTLTSDIIDDLEDEDNRDAPWM
KIDRSLALSAAFSLYTAGLQSINSISTNPLVIKYVLKYIQDAMQGQHDDLINKPETEDECLEVIKLKCGSLFALANVTGT
LLATGEFNKSVESYSYYKGIFEQISGDYHAIFKDNTSDILKDKHTLINLYLKRLFNKSSQELLRIFSDQKLYSQLRLNKK
EFIQKLYDSGASQYVSVLYQLYMHKCGTEVENLNLDIKKIKIIKKHLLNNKNNKKDDEDAEFNKLFFELS

Nucleotide


Download         Length: 933 bp        

>NTDB_id=1080634 ACJX3V_RS14910 WP_025650217.1 3026918..3027850(-) (comQ) [Bacillus amyloliquefaciens strain MEPW12]
ATGAAGAGTATAATAGAGCGGAACATATTTAATGAACATCTAATGCAGCTCCTTCTTCGTTTTATTGAACCAAAAAAAAA
TTTTTCTCTAGCTGAATCAGCTGTTTTGCATTATGTGATCTTTGACGGCGAAAATCAAGAAACCGCAGTGAACTTAGGTG
CCGCTATTGAAATTCTTACACTTACTTCCGATATAATTGATGACCTGGAAGATGAGGATAATCGAGATGCTCCTTGGATG
AAGATAGATCGTTCACTAGCATTAAGTGCAGCATTTTCATTATACACAGCAGGATTGCAAAGCATTAATTCGATTAGTAC
GAATCCTTTAGTGATTAAGTATGTATTAAAATATATTCAAGATGCAATGCAGGGTCAACATGATGATTTGATCAATAAAC
CAGAGACAGAAGATGAATGTTTAGAGGTAATCAAGTTAAAATGCGGAAGTTTATTTGCGTTAGCAAATGTTACTGGTACG
CTTTTAGCAACTGGAGAATTCAATAAGTCTGTTGAAAGTTATTCCTATTATAAAGGGATATTTGAACAAATTTCCGGTGA
TTATCATGCTATTTTTAAGGATAATACTAGTGATATTCTGAAAGATAAACATACATTGATTAATTTATATCTTAAGCGCT
TGTTTAATAAGTCTTCTCAAGAATTGCTTCGTATATTCTCAGATCAAAAATTATATTCGCAACTGCGGCTTAATAAAAAA
GAGTTTATTCAAAAGCTGTATGATTCTGGAGCATCTCAATATGTTTCGGTTTTATACCAACTATACATGCATAAGTGTGG
AACTGAAGTTGAAAATTTAAATTTAGATATAAAGAAGATAAAAATAATAAAAAAACACTTGTTGAATAATAAGAATAATA
AGAAGGATGATGAAGATGCAGAATTTAATAAATTATTTTTTGAATTATCCTGA

Domains

Predicted by InterproScan.

Polyprenyl synthetase (polyprenyl_synt)

(41-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

61.246

93.226

0.571

Multiple sequence alignment