Detailed information NTG1080582

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ACJX3V_RS01930
• Genome accession: NZ_CP176523
• Coordinates: 379155..380303 (+)
• Length: 382 a.a.
• NCBI ID: WP_409461557.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MEPW12
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 374155..385303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJX3V_RS01910	-	374552..375235 (-)	684	WP_014304337.1	ABC transporter ATP-binding protein	-
ACJX3V_RS01915	-	375250..376686 (-)	1437	WP_014304338.1	ABC transporter permease	-
ACJX3V_RS01920	-	376899..377582 (+)	684	WP_003156341.1	response regulator transcription factor	-
ACJX3V_RS01925	-	377569..379002 (+)	1434	WP_161625271.1	sensor histidine kinase	-
ACJX3V_RS01930	rapC	379155..380303 (+)	1149	WP_409461557.1	tetratricopeptide repeat protein	Regulator
ACJX3V_RS01935	phrC	380287..380406 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
ACJX3V_RS01940	-	380557..380667 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
ACJX3V_RS01945	-	380747..382111 (-)	1365	WP_060657805.1	aspartate kinase	-
ACJX3V_RS01950	ceuB	382526..383479 (+)	954	WP_046559346.1	ABC transporter permease	Machinery gene
ACJX3V_RS01955	-	383469..384416 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
ACJX3V_RS01960	-	384410..385168 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45460.73 Da
• Isoelectric Point: 4.9939

>NTDB_id=1080582 ACJX3V_RS01930 WP_409461557.1 379155..380303(+) (rapC) [Bacillus amyloliquefaciens strain MEPW12]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAELYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=1080582 ACJX3V_RS01930 WP_409461557.1 379155..380303(+) (rapC) [Bacillus amyloliquefaciens strain MEPW12]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTATATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	81.937	100	0.819
rapF	Bacillus subtilis subsp. subtilis str. 168	56.842	99.476	0.565