Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACJX3V_RS01950 Genome accession   NZ_CP176523
Coordinates   382526..383479 (+) Length   317 a.a.
NCBI ID   WP_046559346.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377526..388479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS01925 - 377569..379002 (+) 1434 WP_161625271.1 sensor histidine kinase -
  ACJX3V_RS01930 rapC 379155..380303 (+) 1149 WP_409461557.1 tetratricopeptide repeat protein Regulator
  ACJX3V_RS01935 phrC 380287..380406 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ACJX3V_RS01940 - 380557..380667 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  ACJX3V_RS01945 - 380747..382111 (-) 1365 WP_060657805.1 aspartate kinase -
  ACJX3V_RS01950 ceuB 382526..383479 (+) 954 WP_046559346.1 ABC transporter permease Machinery gene
  ACJX3V_RS01955 - 383469..384416 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  ACJX3V_RS01960 - 384410..385168 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  ACJX3V_RS01965 - 385190..386134 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  ACJX3V_RS01970 - 386176..387600 (-) 1425 WP_048367708.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=1080584 ACJX3V_RS01950 WP_046559346.1 382526..383479(+) (ceuB) [Bacillus amyloliquefaciens strain MEPW12]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMIFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1080584 ACJX3V_RS01950 WP_046559346.1 382526..383479(+) (ceuB) [Bacillus amyloliquefaciens strain MEPW12]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGATTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment