Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   ACK0E5_RS07710 Genome accession   NZ_CP176476
Coordinates   1612325..1613566 (-) Length   413 a.a.
NCBI ID   WP_071252690.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain BBM396     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1607325..1618566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK0E5_RS07705 - 1610573..1612300 (-) 1728 WP_218209762.1 proline--tRNA ligase -
  ACK0E5_RS07710 eeP 1612325..1613566 (-) 1242 WP_071252690.1 RIP metalloprotease RseP Regulator
  ACK0E5_RS07715 - 1613583..1614371 (-) 789 WP_003565800.1 phosphatidate cytidylyltransferase -
  ACK0E5_RS07720 - 1614407..1615159 (-) 753 WP_003575287.1 isoprenyl transferase -
  ACK0E5_RS07725 frr 1615690..1616247 (-) 558 WP_003565804.1 ribosome recycling factor -
  ACK0E5_RS07730 pyrH 1616247..1616966 (-) 720 WP_003565806.1 UMP kinase -
  ACK0E5_RS07735 tsf 1617202..1618083 (-) 882 WP_003565808.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45137.75 Da        Isoelectric Point: 8.6663

>NTDB_id=1080346 ACK0E5_RS07710 WP_071252690.1 1612325..1613566(-) (eeP) [Lacticaseibacillus paracasei strain BBM396]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSLILNDQGKVVRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDETTLQTWQVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLLVNFAGPMNNFLLAILAFIIYGLFFGVQVLNTNQIGTVVPGYPAAEAGLKSNATVQTIDGQKMSSFTDL
SKIVSKNAGKSVTFTVKENGKSKNIVIKPNKEGKIGVEAHVDKSPANAIPFGFSQTWNLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGIQGLLFFMGYLSLGLGITNLLPIPVLDGGKILLNLIEIIRRKPLKPETEGVVTMIGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1080346 ACK0E5_RS07710 WP_071252690.1 1612325..1613566(-) (eeP) [Lacticaseibacillus paracasei strain BBM396]
ATGACCACTATCATCGCCTTTATCGTTATCTTCTGCATTCTTGTGGTAGTTCACGAGTTTGGCCATTTTTACTTTGCAAA
ACGCAGCGGCATTCTAGTCCGGGAATTTTCGATCGGTATGGGCCCGAAGCTGTGGGCGTCGCACAAGAACAATACGACCT
ACACGCTGCGGTTGCTACCCCTTGGCGGATACGTCCGCATGGCTGGCTGGCAAGATGAGGAGGACGAGATTAAGCCCGGA
ACGATGCTGAGCCTGATTCTTAACGATCAAGGCAAGGTTGTCCGGATCAATGCCAGTGACAAAACGACTTTGGCCGGTGG
GATGCCGGTTCAAGTGAGCCGCGTCGATTTGGTCAAAGATCTGGTGATTGAAGGTTATCCGAACGGGGACGAAACAACCT
TGCAAACTTGGCAGGTTGACCACGATGCGACGATCATTGAAGAAGACGGAACCGAGGTTCAGATCGCGCCAGAAGACGTT
CAGTTTCAAAACGCCCCGGTTTGGCGCCGGTTATTGGTCAACTTCGCCGGTCCGATGAATAACTTCTTACTCGCGATTCT
AGCTTTTATTATTTACGGTCTGTTTTTTGGTGTTCAGGTGCTCAATACCAACCAAATCGGAACAGTTGTGCCAGGTTATC
CAGCTGCAGAAGCTGGTCTTAAGTCCAATGCGACGGTGCAAACGATTGACGGTCAAAAAATGTCATCATTCACGGATCTT
TCAAAGATCGTCAGTAAAAATGCCGGTAAATCAGTGACATTTACCGTGAAGGAAAACGGTAAAAGCAAGAACATCGTGAT
CAAGCCGAATAAAGAAGGCAAGATCGGGGTTGAAGCACACGTCGATAAGTCCCCAGCAAATGCCATTCCTTTTGGCTTTT
CTCAAACTTGGAATTTGGCTGTCCGCACTTGGGACGTGCTCAAATCCATGGTGACCGGCGGTTTTTCACTCAATAAACTG
GCTGGCCCGGTTGGTATTTATACCATGACGAGTCAAAGTGCCAAAGGCGGTATTCAAGGATTACTCTTCTTTATGGGTTA
CTTGAGTCTCGGCTTAGGGATTACCAATTTGTTGCCGATTCCAGTGCTTGATGGTGGTAAAATTCTTTTGAACCTGATCG
AAATTATTCGCCGTAAGCCATTAAAACCGGAAACGGAAGGCGTTGTGACCATGATTGGCTTGGGCTTGATGGTTCTATTA
ATGCTAGCGGTCACAATCAACGATATCATGCGCTACTTTTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(6-400)

PDZ domain (PDZ_6)

(206-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.292

100

0.506
  eeP Streptococcus thermophilus LMD-9

49.057

100

0.504

Multiple sequence alignment