Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACJ3XG_RS10985 | Genome accession | NZ_CP176468 |
| Coordinates | 2457190..2458062 (+) | Length | 290 a.a. |
| NCBI ID | WP_409438964.1 | Uniprot ID | - |
| Organism | Psychromonas sp. GE-S-Ul-11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2457578..2499411 | 2457190..2458062 | flank | -484 |
Gene organization within MGE regions
Location: 2457190..2499411
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ3XG_RS10985 (ACJ3XG_10985) | pilD | 2457190..2458062 (+) | 873 | WP_409438964.1 | prepilin peptidase | Machinery gene |
| ACJ3XG_RS10990 (ACJ3XG_10990) | tadA | 2458067..2458570 (+) | 504 | WP_290041211.1 | tRNA adenosine(34) deaminase TadA | - |
| ACJ3XG_RS10995 (ACJ3XG_10995) | - | 2458560..2458730 (+) | 171 | WP_169727660.1 | hypothetical protein | - |
| ACJ3XG_RS11000 (ACJ3XG_11000) | - | 2458815..2459756 (-) | 942 | WP_290041207.1 | DMT family transporter | - |
| ACJ3XG_RS11005 (ACJ3XG_11005) | - | 2459978..2460394 (-) | 417 | WP_409438965.1 | CBS domain-containing protein | - |
| ACJ3XG_RS11010 (ACJ3XG_11010) | mltF | 2460587..2462419 (-) | 1833 | WP_409438966.1 | membrane-bound lytic murein transglycosylase MltF | - |
| ACJ3XG_RS11015 (ACJ3XG_11015) | purL | 2462612..2466508 (+) | 3897 | WP_409438967.1 | phosphoribosylformylglycinamidine synthase | - |
| ACJ3XG_RS11020 (ACJ3XG_11020) | - | 2466654..2469359 (+) | 2706 | WP_409438968.1 | EAL domain-containing protein | - |
| ACJ3XG_RS11025 (ACJ3XG_11025) | cls | 2469549..2471006 (+) | 1458 | WP_409438969.1 | cardiolipin synthase | - |
| ACJ3XG_RS11030 (ACJ3XG_11030) | - | 2471452..2471892 (+) | 441 | WP_290041195.1 | hypothetical protein | - |
| ACJ3XG_RS11035 (ACJ3XG_11035) | - | 2471908..2472093 (+) | 186 | WP_409438970.1 | DUF1289 domain-containing protein | - |
| ACJ3XG_RS11040 (ACJ3XG_11040) | - | 2472352..2472807 (-) | 456 | WP_290041191.1 | MerR family transcriptional regulator | - |
| ACJ3XG_RS11045 (ACJ3XG_11045) | - | 2473061..2473312 (+) | 252 | WP_290041189.1 | hypothetical protein | - |
| ACJ3XG_RS11050 (ACJ3XG_11050) | adhE | 2473406..2476090 (-) | 2685 | WP_290041187.1 | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | - |
| ACJ3XG_RS11055 (ACJ3XG_11055) | - | 2476442..2477563 (+) | 1122 | WP_290041185.1 | AI-2E family transporter | - |
| ACJ3XG_RS11060 (ACJ3XG_11060) | - | 2477565..2478494 (+) | 930 | WP_290041183.1 | class I SAM-dependent methyltransferase | - |
| ACJ3XG_RS11065 (ACJ3XG_11065) | - | 2478609..2479211 (-) | 603 | WP_409438971.1 | hypothetical protein | - |
| ACJ3XG_RS11070 (ACJ3XG_11070) | pta | 2479482..2481647 (-) | 2166 | WP_290041179.1 | phosphate acetyltransferase | - |
| ACJ3XG_RS11075 (ACJ3XG_11075) | - | 2481710..2482909 (-) | 1200 | WP_290041178.1 | acetate kinase | - |
| ACJ3XG_RS11080 (ACJ3XG_11080) | yfbV | 2483189..2483638 (+) | 450 | WP_290041176.1 | terminus macrodomain insulation protein YfbV | - |
| ACJ3XG_RS11085 (ACJ3XG_11085) | rlmA | 2483635..2484450 (-) | 816 | WP_409438972.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| ACJ3XG_RS11090 (ACJ3XG_11090) | pflA | 2484554..2485294 (-) | 741 | WP_290041171.1 | pyruvate formate lyase 1-activating protein | - |
| ACJ3XG_RS11095 (ACJ3XG_11095) | pflB | 2485478..2487763 (-) | 2286 | WP_290041169.1 | formate C-acetyltransferase | - |
| ACJ3XG_RS11100 (ACJ3XG_11100) | - | 2488239..2488742 (+) | 504 | WP_409438973.1 | glycine cleavage system protein R | - |
| ACJ3XG_RS11105 (ACJ3XG_11105) | - | 2488851..2490371 (-) | 1521 | WP_409438974.1 | DUF3360 family protein | - |
| ACJ3XG_RS11110 (ACJ3XG_11110) | fldB | 2490813..2491331 (-) | 519 | WP_290041163.1 | flavodoxin FldB | - |
| ACJ3XG_RS11115 (ACJ3XG_11115) | xerD | 2491389..2492285 (+) | 897 | WP_409438975.1 | site-specific tyrosine recombinase XerD | - |
| ACJ3XG_RS11120 (ACJ3XG_11120) | dsbC | 2492417..2493172 (+) | 756 | WP_290041160.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
| ACJ3XG_RS11125 (ACJ3XG_11125) | recJ | 2493229..2494962 (+) | 1734 | WP_409438976.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| ACJ3XG_RS11130 (ACJ3XG_11130) | trmL | 2495013..2495477 (-) | 465 | WP_409438977.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| ACJ3XG_RS11135 (ACJ3XG_11135) | - | 2495823..2496758 (+) | 936 | WP_290041155.1 | cation diffusion facilitator family transporter | - |
| ACJ3XG_RS11140 (ACJ3XG_11140) | cysE | 2496786..2497565 (+) | 780 | WP_290041154.1 | serine O-acetyltransferase | - |
| ACJ3XG_RS11145 (ACJ3XG_11145) | - | 2497585..2497818 (-) | 234 | WP_290041153.1 | DUF1653 domain-containing protein | - |
| ACJ3XG_RS11150 (ACJ3XG_11150) | - | 2497991..2498224 (+) | 234 | WP_290041151.1 | cell division protein ZapB | - |
| ACJ3XG_RS11155 (ACJ3XG_11155) | rraA | 2498332..2498847 (-) | 516 | WP_290041149.1 | ribonuclease E activity regulator RraA | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32284.43 Da Isoelectric Point: 4.7567
>NTDB_id=1080199 ACJ3XG_RS10985 WP_409438964.1 2457190..2458062(+) (pilD) [Psychromonas sp. GE-S-Ul-11]
MSDVITLMEQVPSFYFGLVLVLGLLVGSFLNVVIYRLPVMMQRSWEADCAETFPDSNIKVDDSTFNLVLPRSRCPKCNHL
IGSLENIPLVSWLLQKGRCKHCDCNIPARYPSIELLTGLMSLAVAYVIPFGWPVLFALLFTWTLISLTFIDVDTMLLPDQ
LTLPLVWLGLLVNMSDTFIGLQDAVLGAVFGYLTLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWFGWQALPLIIILSSF
AGAILGIIMIALSKDKQSKPMPFGPYLAIAGWVYLVYGAELTDLYYSLIL
MSDVITLMEQVPSFYFGLVLVLGLLVGSFLNVVIYRLPVMMQRSWEADCAETFPDSNIKVDDSTFNLVLPRSRCPKCNHL
IGSLENIPLVSWLLQKGRCKHCDCNIPARYPSIELLTGLMSLAVAYVIPFGWPVLFALLFTWTLISLTFIDVDTMLLPDQ
LTLPLVWLGLLVNMSDTFIGLQDAVLGAVFGYLTLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWFGWQALPLIIILSSF
AGAILGIIMIALSKDKQSKPMPFGPYLAIAGWVYLVYGAELTDLYYSLIL
Nucleotide
Download Length: 873 bp
>NTDB_id=1080199 ACJ3XG_RS10985 WP_409438964.1 2457190..2458062(+) (pilD) [Psychromonas sp. GE-S-Ul-11]
ATGAGTGACGTGATCACATTGATGGAACAAGTTCCCTCTTTTTATTTTGGGCTTGTTTTAGTCTTAGGCTTATTGGTTGG
TTCATTTTTAAATGTGGTGATTTATCGCTTGCCTGTGATGATGCAACGTAGTTGGGAAGCTGATTGTGCAGAAACATTTC
CTGACAGTAATATTAAAGTTGACGATTCCACCTTCAATTTAGTACTACCTCGTTCGCGTTGCCCTAAATGTAATCATTTG
ATTGGTTCACTTGAAAATATTCCATTAGTCAGCTGGTTGCTACAAAAAGGTCGTTGCAAGCATTGTGATTGCAATATCCC
TGCTCGTTACCCAAGCATAGAGTTATTGACTGGTTTAATGTCATTAGCTGTTGCTTATGTCATTCCGTTTGGTTGGCCTG
TTTTATTTGCACTATTGTTCACTTGGACCTTGATTAGTTTAACCTTTATTGATGTAGATACTATGTTACTGCCGGATCAG
TTAACTTTACCATTGGTTTGGTTAGGTTTACTGGTGAATATGTCTGATACCTTCATAGGGCTTCAGGATGCGGTTTTAGG
CGCTGTTTTCGGTTACTTGACCCTTTGGTCAGTTTACTGGGCGTTTAAGCTCCTGACGGGCAAGGAGGGCATGGGATACG
GTGACTTTAAATTATTAGCTGCGTTAGGTGCATGGTTTGGTTGGCAAGCGCTGCCTTTAATTATTATTCTCTCTTCATTT
GCTGGTGCCATTTTGGGCATTATTATGATCGCTTTATCTAAGGATAAACAAAGCAAACCAATGCCTTTTGGCCCATATTT
AGCGATAGCAGGTTGGGTTTATTTAGTCTACGGTGCAGAATTAACTGACCTCTATTACTCTTTGATTCTTTAG
ATGAGTGACGTGATCACATTGATGGAACAAGTTCCCTCTTTTTATTTTGGGCTTGTTTTAGTCTTAGGCTTATTGGTTGG
TTCATTTTTAAATGTGGTGATTTATCGCTTGCCTGTGATGATGCAACGTAGTTGGGAAGCTGATTGTGCAGAAACATTTC
CTGACAGTAATATTAAAGTTGACGATTCCACCTTCAATTTAGTACTACCTCGTTCGCGTTGCCCTAAATGTAATCATTTG
ATTGGTTCACTTGAAAATATTCCATTAGTCAGCTGGTTGCTACAAAAAGGTCGTTGCAAGCATTGTGATTGCAATATCCC
TGCTCGTTACCCAAGCATAGAGTTATTGACTGGTTTAATGTCATTAGCTGTTGCTTATGTCATTCCGTTTGGTTGGCCTG
TTTTATTTGCACTATTGTTCACTTGGACCTTGATTAGTTTAACCTTTATTGATGTAGATACTATGTTACTGCCGGATCAG
TTAACTTTACCATTGGTTTGGTTAGGTTTACTGGTGAATATGTCTGATACCTTCATAGGGCTTCAGGATGCGGTTTTAGG
CGCTGTTTTCGGTTACTTGACCCTTTGGTCAGTTTACTGGGCGTTTAAGCTCCTGACGGGCAAGGAGGGCATGGGATACG
GTGACTTTAAATTATTAGCTGCGTTAGGTGCATGGTTTGGTTGGCAAGCGCTGCCTTTAATTATTATTCTCTCTTCATTT
GCTGGTGCCATTTTGGGCATTATTATGATCGCTTTATCTAAGGATAAACAAAGCAAACCAATGCCTTTTGGCCCATATTT
AGCGATAGCAGGTTGGGTTTATTTAGTCTACGGTGCAGAATTAACTGACCTCTATTACTCTTTGATTCTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
56.458 |
93.448 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.265 |
98.966 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
49.301 |
98.621 |
0.486 |
| pilD | Acinetobacter baumannii D1279779 |
48.951 |
98.621 |
0.483 |
| pilD | Neisseria gonorrhoeae MS11 |
51.154 |
89.655 |
0.459 |