Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC5044_RS04525 Genome accession   NZ_CP176434
Coordinates   867323..867976 (+) Length   217 a.a.
NCBI ID   WP_115645680.1    Uniprot ID   -
Organism   Campylobacter lari strain 3439-36     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 862323..872976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC5044_RS04500 (UPTC5044_0885) - 862426..863946 (-) 1521 WP_257928415.1 inorganic phosphate transporter -
  UPTC5044_RS04505 (UPTC5044_0886) pdxA 863993..865093 (-) 1101 WP_257928416.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC5044_RS04510 (UPTC5044_0887) - 865090..865857 (-) 768 WP_257928417.1 pyridoxine 5'-phosphate synthase -
  UPTC5044_RS04515 (UPTC5044_0888) - 865913..866872 (+) 960 WP_257928419.1 Ppx/GppA family phosphatase -
  UPTC5044_RS04520 (UPTC5044_0889) - 866883..867326 (+) 444 WP_257928420.1 GatB/YqeY domain-containing protein -
  UPTC5044_RS04525 (UPTC5044_0890) CJE0566 867323..867976 (+) 654 WP_115645680.1 DNA/RNA non-specific endonuclease Regulator
  UPTC5044_RS04530 (UPTC5044_0891) dnaK 868007..869869 (-) 1863 WP_257928421.1 molecular chaperone DnaK -
  UPTC5044_RS04535 (UPTC5044_0892) grpE 869892..870401 (-) 510 WP_087685043.1 nucleotide exchange factor GrpE -
  UPTC5044_RS04540 (UPTC5044_0893) - 870398..871180 (-) 783 WP_039641676.1 HrcA family transcriptional regulator -
  UPTC5044_RS04545 - 871420..871551 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC5044_RS04550 (UPTC5044_0894) - 871540..872169 (-) 630 WP_257928422.1 hypothetical protein -
  UPTC5044_RS04555 (UPTC5044_0895) - 872166..872402 (-) 237 WP_257928423.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25929.86 Da        Isoelectric Point: 9.8001

>NTDB_id=1080147 UPTC5044_RS04525 WP_115645680.1 867323..867976(+) (CJE0566) [Campylobacter lari strain 3439-36]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFNRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1080147 UPTC5044_RS04525 WP_115645680.1 867323..867976(+) (CJE0566) [Campylobacter lari strain 3439-36]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACCA
AGGCAATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATATAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAACAACATAGCTATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTTCCAAATAATGATAATTTTGCAAGATTTAATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.687

92.627

0.581

Multiple sequence alignment