Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   ACKWPP_RS10035 Genome accession   NZ_CP176418
Coordinates   1976344..1978134 (-) Length   596 a.a.
NCBI ID   WP_409373903.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971344..1983134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS10010 (ACKWPP_10010) - 1971664..1972029 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  ACKWPP_RS10015 (ACKWPP_10015) - 1972152..1973054 (-) 903 WP_002942329.1 ABC transporter permease -
  ACKWPP_RS10020 (ACKWPP_10020) opp4B 1973068..1974024 (-) 957 WP_409373900.1 oligopeptide ABC transporter permease -
  ACKWPP_RS10025 (ACKWPP_10025) - 1974026..1974967 (-) 942 WP_409373901.1 ATP-binding cassette domain-containing protein -
  ACKWPP_RS10030 (ACKWPP_10030) - 1974970..1975968 (-) 999 WP_409373902.1 ABC transporter ATP-binding protein -
  ACKWPP_RS10035 (ACKWPP_10035) oppA 1976344..1978134 (-) 1791 WP_409373903.1 oligopeptide ABC transporter substrate-binding protein Regulator
  ACKWPP_RS10040 (ACKWPP_10040) pbp3 1978352..1979593 (+) 1242 WP_409373904.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ACKWPP_RS10045 (ACKWPP_10045) sufB 1979991..1981406 (-) 1416 WP_409373905.1 Fe-S cluster assembly protein SufB -
  ACKWPP_RS10050 (ACKWPP_10050) sufU 1981796..1982236 (-) 441 WP_409373906.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65563.29 Da        Isoelectric Point: 4.4054

>NTDB_id=1080083 ACKWPP_RS10035 WP_409373903.1 1976344..1978134(-) (oppA) [Streptococcus suis strain KKAHC02]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAFVSPTTSSGLLIDELTENTTDST
FGGMVDISLFGYDGDRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGQPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMKEFVAGTAADISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAHIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIATMPADQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDESADKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAKK
LLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGNTFYEVVQANDPAID
MYAGGWSTGYDPNPTGMWGSIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAYEQAFAIPTFESESIIA
LNKRVKNFDSNYGSASGNGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=1080083 ACKWPP_RS10035 WP_409373903.1 1976344..1978134(-) (oppA) [Streptococcus suis strain KKAHC02]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATATGCGTTTGTATCACCAACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGATTCAACA
TTTGGTGGAATGGTTGATATTTCACTGTTCGGTTACGATGGAGATCGTAAGTTGGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAGAAGGTAAGAAAATCACAGTTAGCTTGACTGGTAAGGACTACAAGTGGTCAGATGGTCAACCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGATTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGAAAGAATTCGTTGCTGGAACAGCTGCTGACATCTCTGGTCTTAAGAAAATTGATGACTACACAGTGGA
ATTGACTGTCAAAGAAATGTCACCTTCAATGATGTATGCCGGTGGTGATGTCCCAGCCCATATCCAACCAGAACATATCT
ATAAAGACATCCCTGTTGCAGATTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
TTCATTGAAGATTGACATCGTATCACCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGATATCGCAACTATGC
CAGCTGATCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCTTTGGATTCAGCTTATGAATATATC
TCATTCAACCTTGGTAAATATGACGAGTCTGCTGATAAGAATGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTGAGTCATTGTACAACGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTCTTCGGTGATATTCATGATTCAGAGTTGGAAGGTTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACGGAAGCTAACGAAGCGCTTGTACAACAGTATATTGCTTGGTGGAAAGAAGTTGGCTTGA
ACGTTGAACTTTACACAGGCCGTACAGTTGAAGGCAATACATTCTACGAAGTTGTTCAAGCAAATGATCCTGCTATCGAT
ATGTACGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACTGGTATGTGGGGTTCCATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAATACTAAATTGTTGAATGCAATCAGCTCGACAGAATCATTTGATGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTTACGAACAAGCATTTGCTATTCCTACATTTGAATCTGAGTCAATCATTGCC
CTTAACAAACGTGTGAAAAACTTTGATTCTAACTACGGTTCAGCTTCTGGTAATGGTATCGCTCTTGAAAATATCGAACT
TACAGCAGATAAAGGTGTAGTGGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

91.443

100

0.914

Multiple sequence alignment