Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   ACKWPP_RS09315 Genome accession   NZ_CP176418
Coordinates   1833821..1834510 (-) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1828821..1839510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS09295 (ACKWPP_09295) - 1829578..1830729 (-) 1152 WP_044675055.1 replication initiation/membrane attachment protein -
  ACKWPP_RS09300 (ACKWPP_09300) nrdR 1830716..1831207 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  ACKWPP_RS09305 (ACKWPP_09305) - 1831373..1832503 (-) 1131 WP_024400816.1 ISAs1 family transposase -
  ACKWPP_RS09310 (ACKWPP_09310) - 1832601..1833731 (-) 1131 WP_044679901.1 AI-2E family transporter -
  ACKWPP_RS09315 (ACKWPP_09315) covR 1833821..1834510 (-) 690 WP_012027645.1 DNA-binding response regulator Regulator
  ACKWPP_RS09320 (ACKWPP_09320) gndA 1834592..1836019 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  ACKWPP_RS09325 (ACKWPP_09325) - 1836116..1836655 (-) 540 WP_014736258.1 DUF177 domain-containing protein -
  ACKWPP_RS09330 (ACKWPP_09330) trxB 1836665..1837582 (-) 918 WP_409373863.1 thioredoxin-disulfide reductase -
  ACKWPP_RS09335 (ACKWPP_09335) - 1837596..1837820 (-) 225 WP_014638521.1 DUF4059 family protein -
  ACKWPP_RS09340 (ACKWPP_09340) - 1837838..1839181 (-) 1344 WP_024386748.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=1080080 ACKWPP_RS09315 WP_012027645.1 1833821..1834510(-) (covR) [Streptococcus suis strain KKAHC02]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1080080 ACKWPP_RS09315 WP_012027645.1 1833821..1834510(-) (covR) [Streptococcus suis strain KKAHC02]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTTTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTATTAGCAATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTAGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432

Multiple sequence alignment