Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ACKWPP_RS08340 Genome accession   NZ_CP176418
Coordinates   1641431..1642234 (-) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1636431..1647234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS08325 (ACKWPP_08325) recR 1637019..1637615 (-) 597 WP_002935848.1 recombination mediator RecR -
  ACKWPP_RS08330 (ACKWPP_08330) pbp2b 1637624..1639699 (-) 2076 WP_024384903.1 penicillin-binding protein PBP2B -
  ACKWPP_RS08335 (ACKWPP_08335) vga(F) 1639791..1641176 (-) 1386 WP_409373797.1 ABC-F type ribosomal protection protein Vga(F) -
  ACKWPP_RS08340 (ACKWPP_08340) vicX 1641431..1642234 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  ACKWPP_RS08345 (ACKWPP_08345) micB 1642241..1643590 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ACKWPP_RS08350 (ACKWPP_08350) micA 1643583..1644287 (-) 705 WP_002935840.1 response regulator YycF Regulator
  ACKWPP_RS08355 (ACKWPP_08355) - 1644481..1645242 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  ACKWPP_RS08360 (ACKWPP_08360) - 1645253..1646092 (+) 840 WP_409373798.1 transporter substrate-binding domain-containing protein -
  ACKWPP_RS08365 (ACKWPP_08365) - 1646107..1646805 (+) 699 WP_409373799.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=1080071 ACKWPP_RS08340 WP_002935843.1 1641431..1642234(-) (vicX) [Streptococcus suis strain KKAHC02]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1080071 ACKWPP_RS08340 WP_002935843.1 1641431..1642234(-) (vicX) [Streptococcus suis strain KKAHC02]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTATCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
GCTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment